Cluster: Rep_3115_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3115
- CGC Family ID: CGCFAM_00611
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3115_c_2 | Rep_3115_c_2_18 | 15112 | 16593 | - | GH25 |
| pfam | Rep_3115_c_2 | Rep_3115_c_2_19 | 16698 | 17756 | - | Acyl_transf_3 |
| pfam | Rep_3115_c_2 | Rep_3115_c_2_20 | 17884 | 20244 | + | UvrD-helicase | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor |
| TC | Rep_3115_c_2 | Rep_3115_c_2_21 | 20250 | 21128 | + | 2.A.7.3.52 |
Gene ID: Rep_3115_c_2_18
Type: CAZyme
Location: 15112 - 16593 (-)
Type: CAZyme
Location: 15112 - 16593 (-)
Gene ID: Rep_3115_c_2_19
Type: pfam
Location: 16698 - 17756 (-)
Type: pfam
Location: 16698 - 17756 (-)
Gene ID: Rep_3115_c_2_20
Type: pfam
Location: 17884 - 20244 (+)
Type: pfam
Location: 17884 - 20244 (+)
Gene ID: Rep_3115_c_2_21
Type: TC
Location: 20250 - 21128 (+)
Type: TC
Location: 20250 - 21128 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.