Cluster: Rep_3115_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3115
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3115_c_32 | Rep_3115_c_32_1 | 118 | 1473 | - | 2.A.66.1.33 |
| pfam | Rep_3115_c_32 | Rep_3115_c_32_2 | 1667 | 2620 | + | 2-Hacid_dh | 2-Hacid_dh_C | NAD_binding_2 |
| pfam | Rep_3115_c_32 | Rep_3115_c_32_3 | 2677 | 4077 | - | Glucos_trans_II |
| CAZyme | Rep_3115_c_32 | Rep_3115_c_32_4 | 4216 | 6600 | - | GH13_39 |
| CAZyme | Rep_3115_c_32 | Rep_3115_c_32_5 | 6588 | 8066 | - | GT5 |
| CAZyme | Rep_3115_c_32 | Rep_3115_c_32_6 | 8063 | 9976 | - | CBM48 | GH13_9 |
Gene ID: Rep_3115_c_32_1
Type: TC
Location: 118 - 1473 (-)
Type: TC
Location: 118 - 1473 (-)
Gene ID: Rep_3115_c_32_2
Type: pfam
Location: 1667 - 2620 (+)
Type: pfam
Location: 1667 - 2620 (+)
Gene ID: Rep_3115_c_32_3
Type: pfam
Location: 2677 - 4077 (-)
Type: pfam
Location: 2677 - 4077 (-)
Gene ID: Rep_3115_c_32_4
Type: CAZyme
Location: 4216 - 6600 (-)
Type: CAZyme
Location: 4216 - 6600 (-)
Gene ID: Rep_3115_c_32_5
Type: CAZyme
Location: 6588 - 8066 (-)
Type: CAZyme
Location: 6588 - 8066 (-)
Gene ID: Rep_3115_c_32_6
Type: CAZyme
Location: 8063 - 9976 (-)
Type: CAZyme
Location: 8063 - 9976 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.