Cluster: Rep_3115_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3115
- CGC Family ID: CGCFAM_03469
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3115_c_1 | Rep_3115_c_1_121 | 118189 | 118824 | + | 9.B.28.1.8 |
| CAZyme | Rep_3115_c_1 | Rep_3115_c_1_122 | 118837 | 120843 | + | GH31_13 |
| STP | Rep_3115_c_1 | Rep_3115_c_1_123 | 121066 | 122394 | + | SBP_bac_1 |
| TC | Rep_3115_c_1 | Rep_3115_c_1_124 | 122479 | 123363 | + | 3.A.1.1.47 |
| TC | Rep_3115_c_1 | Rep_3115_c_1_125 | 123363 | 124217 | + | 3.A.1.1.18 |
Gene ID: Rep_3115_c_1_121
Type: TC
Location: 118189 - 118824 (+)
Type: TC
Location: 118189 - 118824 (+)
Gene ID: Rep_3115_c_1_122
Type: CAZyme
Location: 118837 - 120843 (+)
Type: CAZyme
Location: 118837 - 120843 (+)
Gene ID: Rep_3115_c_1_123
Type: STP
Location: 121066 - 122394 (+)
Type: STP
Location: 121066 - 122394 (+)
Gene ID: Rep_3115_c_1_124
Type: TC
Location: 122479 - 123363 (+)
Type: TC
Location: 122479 - 123363 (+)
Gene ID: Rep_3115_c_1_125
Type: TC
Location: 123363 - 124217 (+)
Type: TC
Location: 123363 - 124217 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.