Cluster: Rep_3115_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3115
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3115_c_29 | Rep_3115_c_29_16 | 16496 | 17455 | + | GT2 |
| pfam | Rep_3115_c_29 | Rep_3115_c_29_17 | 17452 | 18327 | + | Aldose_epim |
| pfam | Rep_3115_c_29 | Rep_3115_c_29_18 | 18399 | 19505 | - | AAA_28 |
| TC | Rep_3115_c_29 | Rep_3115_c_29_19 | 19619 | 20968 | - | 2.A.22.5.2 |
Gene ID: Rep_3115_c_29_16
Type: CAZyme
Location: 16496 - 17455 (+)
Type: CAZyme
Location: 16496 - 17455 (+)
Gene ID: Rep_3115_c_29_17
Type: pfam
Location: 17452 - 18327 (+)
Type: pfam
Location: 17452 - 18327 (+)
Gene ID: Rep_3115_c_29_18
Type: pfam
Location: 18399 - 19505 (-)
Type: pfam
Location: 18399 - 19505 (-)
Gene ID: Rep_3115_c_29_19
Type: TC
Location: 19619 - 20968 (-)
Type: TC
Location: 19619 - 20968 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3115_c_29_16 | vegan > omnivore | 1.01844 | 0.03783 |
| Rep_3115_c_29_18 | vegetarian > vegan | 1.18598 | 0.00286 |