Cluster: Rep_3115_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3115
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3115_c_13 | Rep_3115_c_13_2 | 365 | 1885 | - | 3.A.1.5.20 |
| TC | Rep_3115_c_13 | Rep_3115_c_13_3 | 1878 | 2876 | - | 3.A.1.5.20 |
| TC | Rep_3115_c_13 | Rep_3115_c_13_4 | 2889 | 4745 | - | 3.A.1.5.20 |
| TC | Rep_3115_c_13 | Rep_3115_c_13_5 | 4759 | 5778 | - | 3.A.1.5.20 |
| STP | Rep_3115_c_13 | Rep_3115_c_13_6 | 5999 | 7999 | - | SBP_bac_5 |
| CAZyme | Rep_3115_c_13 | Rep_3115_c_13_7 | 8438 | 10771 | + | GH2 |
| CAZyme | Rep_3115_c_13 | Rep_3115_c_13_8 | 10768 | 12339 | + | GH36 |
Gene ID: Rep_3115_c_13_2
Type: TC
Location: 365 - 1885 (-)
Type: TC
Location: 365 - 1885 (-)
Gene ID: Rep_3115_c_13_3
Type: TC
Location: 1878 - 2876 (-)
Type: TC
Location: 1878 - 2876 (-)
Gene ID: Rep_3115_c_13_4
Type: TC
Location: 2889 - 4745 (-)
Type: TC
Location: 2889 - 4745 (-)
Gene ID: Rep_3115_c_13_5
Type: TC
Location: 4759 - 5778 (-)
Type: TC
Location: 4759 - 5778 (-)
Gene ID: Rep_3115_c_13_6
Type: STP
Location: 5999 - 7999 (-)
Type: STP
Location: 5999 - 7999 (-)
Gene ID: Rep_3115_c_13_7
Type: CAZyme
Location: 8438 - 10771 (+)
Type: CAZyme
Location: 8438 - 10771 (+)
Gene ID: Rep_3115_c_13_8
Type: CAZyme
Location: 10768 - 12339 (+)
Type: CAZyme
Location: 10768 - 12339 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.