Cluster: Rep_3115_CGC12
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3115
- CGC Family ID: CGCFAM_00637
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3115_c_10 | Rep_3115_c_10_62 | 65501 | 66793 | - | GT4 |
| pfam | Rep_3115_c_10 | Rep_3115_c_10_63 | 67170 | 67409 | - | Ribosomal_S18 |
| TC | Rep_3115_c_10 | Rep_3115_c_10_64 | 67431 | 67898 | - | 3.A.7.19.1 |
Gene ID: Rep_3115_c_10_62
Type: CAZyme
Location: 65501 - 66793 (-)
Type: CAZyme
Location: 65501 - 66793 (-)
Gene ID: Rep_3115_c_10_63
Type: pfam
Location: 67170 - 67409 (-)
Type: pfam
Location: 67170 - 67409 (-)
Gene ID: Rep_3115_c_10_64
Type: TC
Location: 67431 - 67898 (-)
Type: TC
Location: 67431 - 67898 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3115_c_10_64 | vegetarian > omnivore | 1.26868 | 0.01878 |