Cluster: Rep_3115_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3115
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3115_c_4 | Rep_3115_c_4_67 | 70786 | 72435 | - | GH13_31 |
| TF | Rep_3115_c_4 | Rep_3115_c_4_68 | 72425 | 73918 | - | HTH_AraC |
| TC | Rep_3115_c_4 | Rep_3115_c_4_69 | 73923 | 75686 | - | 8.A.59.2.1 |
| STP | Rep_3115_c_4 | Rep_3115_c_4_70 | 75969 | 77291 | + | SBP_bac_1 |
| TC | Rep_3115_c_4 | Rep_3115_c_4_71 | 77384 | 78262 | + | 3.A.1.1.42 |
| TC | Rep_3115_c_4 | Rep_3115_c_4_72 | 78262 | 79092 | + | 3.A.1.1.45 |
| CAZyme | Rep_3115_c_4 | Rep_3115_c_4_73 | 79096 | 80823 | + | GH13_2 |
Gene ID: Rep_3115_c_4_67
Type: CAZyme
Location: 70786 - 72435 (-)
Type: CAZyme
Location: 70786 - 72435 (-)
Gene ID: Rep_3115_c_4_68
Type: TF
Location: 72425 - 73918 (-)
Type: TF
Location: 72425 - 73918 (-)
Gene ID: Rep_3115_c_4_69
Type: TC
Location: 73923 - 75686 (-)
Type: TC
Location: 73923 - 75686 (-)
Gene ID: Rep_3115_c_4_70
Type: STP
Location: 75969 - 77291 (+)
Type: STP
Location: 75969 - 77291 (+)
Gene ID: Rep_3115_c_4_71
Type: TC
Location: 77384 - 78262 (+)
Type: TC
Location: 77384 - 78262 (+)
Gene ID: Rep_3115_c_4_72
Type: TC
Location: 78262 - 79092 (+)
Type: TC
Location: 78262 - 79092 (+)
Gene ID: Rep_3115_c_4_73
Type: CAZyme
Location: 79096 - 80823 (+)
Type: CAZyme
Location: 79096 - 80823 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp934573855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.