Cluster: Rep_30_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_30
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_30_c_48 | Rep_30_c_48_38 | 43465 | 44487 | + | 3.A.1.23.7 |
| pfam | Rep_30_c_48 | Rep_30_c_48_39 | 44484 | 45248 | + | CbiQ |
| TC | Rep_30_c_48 | Rep_30_c_48_40 | 45259 | 45957 | + | 3.A.1.23.8 |
| pfam | Rep_30_c_48 | Rep_30_c_48_41 | 46643 | 47530 | - | Formyl_trans_N | Formyl_trans_C |
| CAZyme | Rep_30_c_48 | Rep_30_c_48_42 | 47535 | 48509 | - | GT2 |
| TC | Rep_30_c_48 | Rep_30_c_48_43 | 48896 | 49525 | - | 2.A.76.1.7 |
Gene ID: Rep_30_c_48_38
Type: TC
Location: 43465 - 44487 (+)
Type: TC
Location: 43465 - 44487 (+)
Gene ID: Rep_30_c_48_39
Type: pfam
Location: 44484 - 45248 (+)
Type: pfam
Location: 44484 - 45248 (+)
Gene ID: Rep_30_c_48_40
Type: TC
Location: 45259 - 45957 (+)
Type: TC
Location: 45259 - 45957 (+)
Gene ID: Rep_30_c_48_41
Type: pfam
Location: 46643 - 47530 (-)
Type: pfam
Location: 46643 - 47530 (-)
Gene ID: Rep_30_c_48_42
Type: CAZyme
Location: 47535 - 48509 (-)
Type: CAZyme
Location: 47535 - 48509 (-)
Gene ID: Rep_30_c_48_43
Type: TC
Location: 48896 - 49525 (-)
Type: TC
Location: 48896 - 49525 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Opitutales
Family
CAG-312
Genus
UMGS1490
Species
UMGS1490 sp900552245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.