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Cluster: Rep_30_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_30_c_44 Rep_30_c_44_2 1119 3698 + GH115
CAZyme Rep_30_c_44 Rep_30_c_44_3 3899 6331 - GH95
pfam Rep_30_c_44 Rep_30_c_44_4 6350 6784 - RbsD_FucU
TC Rep_30_c_44 Rep_30_c_44_5 6762 8150 - 2.A.1.7.5
pfam Rep_30_c_44 Rep_30_c_44_6 8178 9245 - ADH_zinc_N | ADH_N
pfam Rep_30_c_44 Rep_30_c_44_7 9265 10287 - Aldo_ket_red
CAZyme Rep_30_c_44 Rep_30_c_44_8 10341 10643 - CBM32
CAZyme Rep_30_c_44 Rep_30_c_44_9 10588 11625 - CBM32
CAZyme Rep_30_c_44 Rep_30_c_44_10 11890 12447 - GH29
Gene ID: Rep_30_c_44_2
Type: CAZyme
Location: 1119 - 3698 (+)
Gene ID: Rep_30_c_44_3
Type: CAZyme
Location: 3899 - 6331 (-)
Gene ID: Rep_30_c_44_4
Type: pfam
Location: 6350 - 6784 (-)
Gene ID: Rep_30_c_44_5
Type: TC
Location: 6762 - 8150 (-)
Gene ID: Rep_30_c_44_6
Type: pfam
Location: 8178 - 9245 (-)
Gene ID: Rep_30_c_44_7
Type: pfam
Location: 9265 - 10287 (-)
Gene ID: Rep_30_c_44_8
Type: CAZyme
Location: 10341 - 10643 (-)
Gene ID: Rep_30_c_44_9
Type: CAZyme
Location: 10588 - 11625 (-)
Gene ID: Rep_30_c_44_10
Type: CAZyme
Location: 11890 - 12447 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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