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Cluster: Rep_30_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_30_c_20 Rep_30_c_20_1 305 1270 - GH43_1
CAZyme Rep_30_c_20 Rep_30_c_20_2 1272 2426 - GH10
TC Rep_30_c_20 Rep_30_c_20_3 2433 3932 - 2.A.2.3.4
CAZyme Rep_30_c_20 Rep_30_c_20_4 3935 5896 - GH97
NULL(UNKNOWN) Rep_30_c_20 Rep_30_c_20_5 5921 6724 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_30_c_20 Rep_30_c_20_6 7001 11248 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_30_c_20 Rep_30_c_20_7 11467 12483 + 2.A.28.2.4
TC Rep_30_c_20 Rep_30_c_20_8 12446 12862 - 2.A.7.2.1
TC Rep_30_c_20 Rep_30_c_20_9 13043 14794 + 3.A.1.106.2
CAZyme Rep_30_c_20 Rep_30_c_20_10 15366 16352 - GT2
CAZyme Rep_30_c_20 Rep_30_c_20_11 16440 17405 - GT2
Gene ID: Rep_30_c_20_1
Type: CAZyme
Location: 305 - 1270 (-)
Gene ID: Rep_30_c_20_2
Type: CAZyme
Location: 1272 - 2426 (-)
Gene ID: Rep_30_c_20_3
Type: TC
Location: 2433 - 3932 (-)
Gene ID: Rep_30_c_20_4
Type: CAZyme
Location: 3935 - 5896 (-)
Gene ID: Rep_30_c_20_5
Type:
Location: 5921 - 6724 (-)
Gene ID: Rep_30_c_20_6
Type:
Location: 7001 - 11248 (+)
Gene ID: Rep_30_c_20_7
Type: TC
Location: 11467 - 12483 (+)
Gene ID: Rep_30_c_20_8
Type: TC
Location: 12446 - 12862 (-)
Gene ID: Rep_30_c_20_9
Type: TC
Location: 13043 - 14794 (+)
Gene ID: Rep_30_c_20_10
Type: CAZyme
Location: 15366 - 16352 (-)
Gene ID: Rep_30_c_20_11
Type: CAZyme
Location: 16440 - 17405 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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