Cluster: Rep_3077_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3077
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3077_c_3 | Rep_3077_c_3_11 | 12514 | 13443 | + | 3.A.1.1.11 |
| TC | Rep_3077_c_3 | Rep_3077_c_3_12 | 13454 | 14311 | + | 3.A.1.1.11 |
| TF | Rep_3077_c_3 | Rep_3077_c_3_13 | 14577 | 15395 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_3077_c_3 | Rep_3077_c_3_14 | 15507 | 17063 | + | GH28 |
| CAZyme | Rep_3077_c_3 | Rep_3077_c_3_15 | 17067 | 18212 | + | GH105 |
Gene ID: Rep_3077_c_3_11
Type: TC
Location: 12514 - 13443 (+)
Type: TC
Location: 12514 - 13443 (+)
Gene ID: Rep_3077_c_3_12
Type: TC
Location: 13454 - 14311 (+)
Type: TC
Location: 13454 - 14311 (+)
Gene ID: Rep_3077_c_3_13
Type: TF
Location: 14577 - 15395 (-)
Type: TF
Location: 14577 - 15395 (-)
Gene ID: Rep_3077_c_3_14
Type: CAZyme
Location: 15507 - 17063 (+)
Type: CAZyme
Location: 15507 - 17063 (+)
Gene ID: Rep_3077_c_3_15
Type: CAZyme
Location: 17067 - 18212 (+)
Type: CAZyme
Location: 17067 - 18212 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp003449675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.