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Cluster: Rep_3077_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3077_c_2 Rep_3077_c_2_63 78102 80507 + GT35
CAZyme Rep_3077_c_2 Rep_3077_c_2_64 80582 82438 + GH13_39
pfam Rep_3077_c_2 Rep_3077_c_2_65 82701 83162 + NfeD
TC Rep_3077_c_2 Rep_3077_c_2_66 83178 84083 + 8.A.21.2.2
NULL(UNKNOWN) Rep_3077_c_2 Rep_3077_c_2_67 84179 84577 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3077_c_2 Rep_3077_c_2_68 84603 85889 - Orn_DAP_Arg_deC | Orn_Arg_deC_N
TC Rep_3077_c_2 Rep_3077_c_2_69 85974 87872 - 9.B.18.2.1
pfam Rep_3077_c_2 Rep_3077_c_2_70 88023 89588 - Polysacc_synt
TC Rep_3077_c_2 Rep_3077_c_2_71 89797 90630 + 3.A.1.132.3
Gene ID: Rep_3077_c_2_63
Type: CAZyme
Location: 78102 - 80507 (+)
Gene ID: Rep_3077_c_2_64
Type: CAZyme
Location: 80582 - 82438 (+)
Gene ID: Rep_3077_c_2_65
Type: pfam
Location: 82701 - 83162 (+)
Gene ID: Rep_3077_c_2_66
Type: TC
Location: 83178 - 84083 (+)
Gene ID: Rep_3077_c_2_67
Type:
Location: 84179 - 84577 (-)
Gene ID: Rep_3077_c_2_68
Type: pfam
Location: 84603 - 85889 (-)
Gene ID: Rep_3077_c_2_69
Type: TC
Location: 85974 - 87872 (-)
Gene ID: Rep_3077_c_2_70
Type: pfam
Location: 88023 - 89588 (-)
Gene ID: Rep_3077_c_2_71
Type: TC
Location: 89797 - 90630 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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