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Cluster: Rep_3077_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3077_c_1 Rep_3077_c_1_238 270580 271710 + 3.B.1.1.6
NULL(UNKNOWN) Rep_3077_c_1 Rep_3077_c_1_239 271724 271852 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3077_c_1 Rep_3077_c_1_240 271949 272782 - HTH_AraC | HTH_AraC
TC Rep_3077_c_1 Rep_3077_c_1_241 272995 274383 + 2.A.2.3.5
peptidase Rep_3077_c_1 Rep_3077_c_1_242 274387 275142 + S09.UPW
STP Rep_3077_c_1 Rep_3077_c_1_243 275173 277098 + Pyr_redox_2
CAZyme Rep_3077_c_1 Rep_3077_c_1_244 277524 278996 + CE1
TC Rep_3077_c_1 Rep_3077_c_1_245 279445 280404 - 2.A.19.5.2
TC Rep_3077_c_1 Rep_3077_c_1_246 280648 281955 - 3.A.1.121.4
Gene ID: Rep_3077_c_1_238
Type: TC
Location: 270580 - 271710 (+)
Gene ID: Rep_3077_c_1_239
Type:
Location: 271724 - 271852 (+)
Gene ID: Rep_3077_c_1_240
Type: TF
Location: 271949 - 272782 (-)
Gene ID: Rep_3077_c_1_241
Type: TC
Location: 272995 - 274383 (+)
Gene ID: Rep_3077_c_1_242
Type: peptidase
Location: 274387 - 275142 (+)
Gene ID: Rep_3077_c_1_243
Type: STP
Location: 275173 - 277098 (+)
Gene ID: Rep_3077_c_1_244
Type: CAZyme
Location: 277524 - 278996 (+)
Gene ID: Rep_3077_c_1_245
Type: TC
Location: 279445 - 280404 (-)
Gene ID: Rep_3077_c_1_246
Type: TC
Location: 280648 - 281955 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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