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Cluster: Rep_3077_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3077_c_19 Rep_3077_c_19_7 5106 5555 - 1.A.22.1.3
NULL(UNKNOWN) Rep_3077_c_19 Rep_3077_c_19_8 5774 6823 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3077_c_19 Rep_3077_c_19_9 6912 7139 - DUF1653
TC Rep_3077_c_19 Rep_3077_c_19_10 7214 9031 - 1.A.33.1.4
pfam Rep_3077_c_19 Rep_3077_c_19_11 9114 10223 - SseB | Sel1 | Sel1 | Sel1
TC Rep_3077_c_19 Rep_3077_c_19_12 10523 12262 + 3.A.1.135.5
TC Rep_3077_c_19 Rep_3077_c_19_13 12259 14034 + 3.A.1.135.5
pfam Rep_3077_c_19 Rep_3077_c_19_14 14292 14843 + TatA_B_E
pfam Rep_3077_c_19 Rep_3077_c_19_15 14945 15142 + TatA_B_E
TC Rep_3077_c_19 Rep_3077_c_19_16 15145 15954 + 2.A.64.1.3
CAZyme Rep_3077_c_19 Rep_3077_c_19_17 16109 18370 - GT35
TF Rep_3077_c_19 Rep_3077_c_19_18 18558 19415 + HTH_AraC | HTH_AraC
STP Rep_3077_c_19 Rep_3077_c_19_19 19552 19809 + HMA
TC Rep_3077_c_19 Rep_3077_c_19_20 20089 20796 - 2.A.122.1.6
TC Rep_3077_c_19 Rep_3077_c_19_21 20777 21088 - 1.E.14.1.17
Gene ID: Rep_3077_c_19_7
Type: TC
Location: 5106 - 5555 (-)
Gene ID: Rep_3077_c_19_8
Type:
Location: 5774 - 6823 (-)
Gene ID: Rep_3077_c_19_9
Type: pfam
Location: 6912 - 7139 (-)
Gene ID: Rep_3077_c_19_10
Type: TC
Location: 7214 - 9031 (-)
Gene ID: Rep_3077_c_19_11
Type: pfam
Location: 9114 - 10223 (-)
Gene ID: Rep_3077_c_19_12
Type: TC
Location: 10523 - 12262 (+)
Gene ID: Rep_3077_c_19_13
Type: TC
Location: 12259 - 14034 (+)
Gene ID: Rep_3077_c_19_14
Type: pfam
Location: 14292 - 14843 (+)
Gene ID: Rep_3077_c_19_15
Type: pfam
Location: 14945 - 15142 (+)
Gene ID: Rep_3077_c_19_16
Type: TC
Location: 15145 - 15954 (+)
Gene ID: Rep_3077_c_19_17
Type: CAZyme
Location: 16109 - 18370 (-)
Gene ID: Rep_3077_c_19_18
Type: TF
Location: 18558 - 19415 (+)
Gene ID: Rep_3077_c_19_19
Type: STP
Location: 19552 - 19809 (+)
Gene ID: Rep_3077_c_19_20
Type: TC
Location: 20089 - 20796 (-)
Gene ID: Rep_3077_c_19_21
Type: TC
Location: 20777 - 21088 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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