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Cluster: Rep_3077_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3077_c_18 Rep_3077_c_18_24 21550 22767 + 2.A.103.1.7
TC Rep_3077_c_18 Rep_3077_c_18_25 22825 23406 - 3.A.1.19.1
pfam Rep_3077_c_18 Rep_3077_c_18_26 23400 24170 - BPD_transp_1
TC Rep_3077_c_18 Rep_3077_c_18_27 24381 25661 + 2.A.26.1.2
pfam Rep_3077_c_18 Rep_3077_c_18_28 25675 26085 + Pep_deformylase
TC Rep_3077_c_18 Rep_3077_c_18_29 26289 27155 - 3.A.1.1.48
TC Rep_3077_c_18 Rep_3077_c_18_30 27158 28135 - 3.A.1.1.4
pfam Rep_3077_c_18 Rep_3077_c_18_31 28233 29675 - TAT_signal
TF Rep_3077_c_18 Rep_3077_c_18_32 29754 30761 - LacI
CAZyme Rep_3077_c_18 Rep_3077_c_18_33 31289 33724 + GH94
TC Rep_3077_c_18 Rep_3077_c_18_34 34618 35133 + 3.A.1.26.5
Gene ID: Rep_3077_c_18_24
Type: TC
Location: 21550 - 22767 (+)
Gene ID: Rep_3077_c_18_25
Type: TC
Location: 22825 - 23406 (-)
Gene ID: Rep_3077_c_18_26
Type: pfam
Location: 23400 - 24170 (-)
Gene ID: Rep_3077_c_18_27
Type: TC
Location: 24381 - 25661 (+)
Gene ID: Rep_3077_c_18_28
Type: pfam
Location: 25675 - 26085 (+)
Gene ID: Rep_3077_c_18_29
Type: TC
Location: 26289 - 27155 (-)
Gene ID: Rep_3077_c_18_30
Type: TC
Location: 27158 - 28135 (-)
Gene ID: Rep_3077_c_18_31
Type: pfam
Location: 28233 - 29675 (-)
Gene ID: Rep_3077_c_18_32
Type: TF
Location: 29754 - 30761 (-)
Gene ID: Rep_3077_c_18_33
Type: CAZyme
Location: 31289 - 33724 (+)
Gene ID: Rep_3077_c_18_34
Type: TC
Location: 34618 - 35133 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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