Cluster: Rep_3077_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3077
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3077_c_12 | Rep_3077_c_12_3 | 2395 | 3993 | + | 4.A.1.2.11 |
| CAZyme | Rep_3077_c_12 | Rep_3077_c_12_4 | 4050 | 5477 | + | GH1 |
| TC | Rep_3077_c_12 | Rep_3077_c_12_5 | 5470 | 6327 | + | 2.A.115.1.5 |
Gene ID: Rep_3077_c_12_3
Type: TC
Location: 2395 - 3993 (+)
Type: TC
Location: 2395 - 3993 (+)
Gene ID: Rep_3077_c_12_4
Type: CAZyme
Location: 4050 - 5477 (+)
Type: CAZyme
Location: 4050 - 5477 (+)
Gene ID: Rep_3077_c_12_5
Type: TC
Location: 5470 - 6327 (+)
Type: TC
Location: 5470 - 6327 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp003449675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3077_c_12_3 | vegetarian > omnivore | 1.09516 | 0.02000 |
| Rep_3077_c_12_3 | vegetarian > vegan | 1.79082 | 0.00565 |
| Rep_3077_c_12_4 | vegetarian > omnivore | 1.15809 | 0.01681 |
| Rep_3077_c_12_4 | vegetarian > vegan | 2.06747 | 0.00565 |
| Rep_3077_c_12_5 | vegetarian > omnivore | 1.53170 | 0.01681 |
| Rep_3077_c_12_5 | vegetarian > vegan | 2.19389 | 0.00565 |