dbCAN Logo

Cluster: Rep_3077_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3077_c_9 Rep_3077_c_9_20 21941 23428 + 8.A.59.2.1
TF Rep_3077_c_9 Rep_3077_c_9_21 23425 24216 + HTH_AraC | HTH_AraC
TC Rep_3077_c_9 Rep_3077_c_9_22 24440 25465 + 2.A.56.1.5
pfam Rep_3077_c_9 Rep_3077_c_9_23 25477 26031 + DctQ
TC Rep_3077_c_9 Rep_3077_c_9_24 26035 27336 + 2.A.56.1.5
TC Rep_3077_c_9 Rep_3077_c_9_25 27475 28461 + 2.A.56.1.5
STP Rep_3077_c_9 Rep_3077_c_9_26 28713 29276 + TetR_N
CAZyme Rep_3077_c_9 Rep_3077_c_9_27 29273 31654 + GH2
TC Rep_3077_c_9 Rep_3077_c_9_28 31645 33030 + 2.A.2.1.1
CAZyme Rep_3077_c_9 Rep_3077_c_9_29 33023 34624 + GH36
Gene ID: Rep_3077_c_9_20
Type: TC
Location: 21941 - 23428 (+)
Gene ID: Rep_3077_c_9_21
Type: TF
Location: 23425 - 24216 (+)
Gene ID: Rep_3077_c_9_22
Type: TC
Location: 24440 - 25465 (+)
Gene ID: Rep_3077_c_9_23
Type: pfam
Location: 25477 - 26031 (+)
Gene ID: Rep_3077_c_9_24
Type: TC
Location: 26035 - 27336 (+)
Gene ID: Rep_3077_c_9_25
Type: TC
Location: 27475 - 28461 (+)
Gene ID: Rep_3077_c_9_26
Type: STP
Location: 28713 - 29276 (+)
Gene ID: Rep_3077_c_9_27
Type: CAZyme
Location: 29273 - 31654 (+)
Gene ID: Rep_3077_c_9_28
Type: TC
Location: 31645 - 33030 (+)
Gene ID: Rep_3077_c_9_29
Type: CAZyme
Location: 33023 - 34624 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List