Cluster: Rep_3077_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3077
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3077_c_6 | Rep_3077_c_6_73 | 86838 | 88277 | - | GH1 |
| pfam | Rep_3077_c_6 | Rep_3077_c_6_74 | 88601 | 89470 | + | SAICAR_synt |
| TF | Rep_3077_c_6 | Rep_3077_c_6_75 | 89635 | 90117 | + | MarR |
| TC | Rep_3077_c_6 | Rep_3077_c_6_76 | 90258 | 92009 | + | 3.A.1.135.5 |
| TC | Rep_3077_c_6 | Rep_3077_c_6_77 | 92009 | 93928 | + | 3.A.1.135.5 |
| CAZyme | Rep_3077_c_6 | Rep_3077_c_6_78 | 94178 | 95947 | + | GH2 |
Gene ID: Rep_3077_c_6_73
Type: CAZyme
Location: 86838 - 88277 (-)
Type: CAZyme
Location: 86838 - 88277 (-)
Gene ID: Rep_3077_c_6_74
Type: pfam
Location: 88601 - 89470 (+)
Type: pfam
Location: 88601 - 89470 (+)
Gene ID: Rep_3077_c_6_75
Type: TF
Location: 89635 - 90117 (+)
Type: TF
Location: 89635 - 90117 (+)
Gene ID: Rep_3077_c_6_76
Type: TC
Location: 90258 - 92009 (+)
Type: TC
Location: 90258 - 92009 (+)
Gene ID: Rep_3077_c_6_77
Type: TC
Location: 92009 - 93928 (+)
Type: TC
Location: 92009 - 93928 (+)
Gene ID: Rep_3077_c_6_78
Type: CAZyme
Location: 94178 - 95947 (+)
Type: CAZyme
Location: 94178 - 95947 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp003449675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.