Cluster: Rep_3077_CGC12
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_3077
- CGC Family ID: CGCFAM_03224
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3077_c_5 | Rep_3077_c_5_69 | 80032 | 81066 | + | 2.A.56.1.5 |
| TC | Rep_3077_c_5 | Rep_3077_c_5_70 | 81168 | 81656 | + | 2.A.56.1.5 |
| TC | Rep_3077_c_5 | Rep_3077_c_5_71 | 81656 | 82975 | + | 2.A.56.1.5 |
| CAZyme | Rep_3077_c_5 | Rep_3077_c_5_72 | 83094 | 85589 | + | GH31_2 |
| CAZyme | Rep_3077_c_5 | Rep_3077_c_5_73 | 85611 | 88127 | + | GH31_2 |
| TC | Rep_3077_c_5 | Rep_3077_c_5_74 | 88217 | 89593 | - | 2.A.66.1.33 |
| TF | Rep_3077_c_5 | Rep_3077_c_5_75 | 89762 | 90787 | - | LacI |
| TC | Rep_3077_c_5 | Rep_3077_c_5_76 | 91070 | 92749 | + | 4.A.1.1.11 |
| pfam | Rep_3077_c_5 | Rep_3077_c_5_77 | 92756 | 93574 | + | Exo_endo_phos |
| CAZyme | Rep_3077_c_5 | Rep_3077_c_5_78 | 93591 | 95093 | + | GH77 |
| TF | Rep_3077_c_5 | Rep_3077_c_5_79 | 95273 | 95983 | + | LytTR |
| pfam | Rep_3077_c_5 | Rep_3077_c_5_80 | 95980 | 97254 | + | HATPase_c_5 |
| CAZyme | Rep_3077_c_5 | Rep_3077_c_5_81 | 97493 | 100378 | + | GH3 |
| CAZyme | Rep_3077_c_5 | Rep_3077_c_5_82 | 100547 | 102964 | + | GH3 |
Gene ID: Rep_3077_c_5_69
Type: TC
Location: 80032 - 81066 (+)
Type: TC
Location: 80032 - 81066 (+)
Gene ID: Rep_3077_c_5_70
Type: TC
Location: 81168 - 81656 (+)
Type: TC
Location: 81168 - 81656 (+)
Gene ID: Rep_3077_c_5_71
Type: TC
Location: 81656 - 82975 (+)
Type: TC
Location: 81656 - 82975 (+)
Gene ID: Rep_3077_c_5_72
Type: CAZyme
Location: 83094 - 85589 (+)
Type: CAZyme
Location: 83094 - 85589 (+)
Gene ID: Rep_3077_c_5_73
Type: CAZyme
Location: 85611 - 88127 (+)
Type: CAZyme
Location: 85611 - 88127 (+)
Gene ID: Rep_3077_c_5_74
Type: TC
Location: 88217 - 89593 (-)
Type: TC
Location: 88217 - 89593 (-)
Gene ID: Rep_3077_c_5_75
Type: TF
Location: 89762 - 90787 (-)
Type: TF
Location: 89762 - 90787 (-)
Gene ID: Rep_3077_c_5_76
Type: TC
Location: 91070 - 92749 (+)
Type: TC
Location: 91070 - 92749 (+)
Gene ID: Rep_3077_c_5_77
Type: pfam
Location: 92756 - 93574 (+)
Type: pfam
Location: 92756 - 93574 (+)
Gene ID: Rep_3077_c_5_78
Type: CAZyme
Location: 93591 - 95093 (+)
Type: CAZyme
Location: 93591 - 95093 (+)
Gene ID: Rep_3077_c_5_79
Type: TF
Location: 95273 - 95983 (+)
Type: TF
Location: 95273 - 95983 (+)
Gene ID: Rep_3077_c_5_80
Type: pfam
Location: 95980 - 97254 (+)
Type: pfam
Location: 95980 - 97254 (+)
Gene ID: Rep_3077_c_5_81
Type: CAZyme
Location: 97493 - 100378 (+)
Type: CAZyme
Location: 97493 - 100378 (+)
Gene ID: Rep_3077_c_5_82
Type: CAZyme
Location: 100547 - 102964 (+)
Type: CAZyme
Location: 100547 - 102964 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp003449675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.