Cluster: Rep_3065_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_3065
- CGC Family ID: CGCFAM_08301
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3065_c_0 | Rep_3065_c_0_535 | 584900 | 585826 | + | 3.A.1.124.3 |
| pfam | Rep_3065_c_0 | Rep_3065_c_0_536 | 585828 | 586577 | + | ABC2_membrane_4 |
| pfam | Rep_3065_c_0 | Rep_3065_c_0_537 | 586582 | 587316 | + | ABC2_membrane_4 |
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_538 | 587754 | 590768 | - | GH2 |
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_539 | 590865 | 592553 | - | GH154 |
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_540 | 592553 | 593716 | - | GH88 |
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_541 | 593719 | 595515 | - | GH2 |
Gene ID: Rep_3065_c_0_535
Type: TC
Location: 584900 - 585826 (+)
Type: TC
Location: 584900 - 585826 (+)
Gene ID: Rep_3065_c_0_536
Type: pfam
Location: 585828 - 586577 (+)
Type: pfam
Location: 585828 - 586577 (+)
Gene ID: Rep_3065_c_0_537
Type: pfam
Location: 586582 - 587316 (+)
Type: pfam
Location: 586582 - 587316 (+)
Gene ID: Rep_3065_c_0_538
Type: CAZyme
Location: 587754 - 590768 (-)
Type: CAZyme
Location: 587754 - 590768 (-)
Gene ID: Rep_3065_c_0_539
Type: CAZyme
Location: 590865 - 592553 (-)
Type: CAZyme
Location: 590865 - 592553 (-)
Gene ID: Rep_3065_c_0_540
Type: CAZyme
Location: 592553 - 593716 (-)
Type: CAZyme
Location: 592553 - 593716 (-)
Gene ID: Rep_3065_c_0_541
Type: CAZyme
Location: 593719 - 595515 (-)
Type: CAZyme
Location: 593719 - 595515 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.