dbCAN Logo

Cluster: Rep_3065_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3065_c_0 Rep_3065_c_0_199 213325 214674 + 3.A.1.106.15
TF Rep_3065_c_0 Rep_3065_c_0_200 215027 215986 + HTH_AraC | HTH_AraC
pfam Rep_3065_c_0 Rep_3065_c_0_201 216269 217603 + SBP_bac_8
TC Rep_3065_c_0 Rep_3065_c_0_202 217637 218536 + 3.A.1.1.4
TC Rep_3065_c_0 Rep_3065_c_0_203 218529 219392 + 3.A.1.1.4
CAZyme Rep_3065_c_0 Rep_3065_c_0_204 219518 222601 + GH2
CAZyme Rep_3065_c_0 Rep_3065_c_0_205 223310 227368 + CE12 | PL9_1
Gene ID: Rep_3065_c_0_199
Type: TC
Location: 213325 - 214674 (+)
Gene ID: Rep_3065_c_0_200
Type: TF
Location: 215027 - 215986 (+)
Gene ID: Rep_3065_c_0_201
Type: pfam
Location: 216269 - 217603 (+)
Gene ID: Rep_3065_c_0_202
Type: TC
Location: 217637 - 218536 (+)
Gene ID: Rep_3065_c_0_203
Type: TC
Location: 218529 - 219392 (+)
Gene ID: Rep_3065_c_0_204
Type: CAZyme
Location: 219518 - 222601 (+)
Gene ID: Rep_3065_c_0_205
Type: CAZyme
Location: 223310 - 227368 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3065_c_0_205 vegetarian > vegan 1.26153 0.01287

🧭 Explore Read Mapping of CGC

← Back to Cluster List