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Cluster: Rep_3065_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3065_c_0 Rep_3065_c_0_1815 1954386 1955366 - GT2
TF Rep_3065_c_0 Rep_3065_c_0_1816 1955413 1956093 - 0037767
pfam Rep_3065_c_0 Rep_3065_c_0_1817 1956262 1957281 + VitK2_biosynth | OpuAC | NMT1 | Phosphonate-bd | NMT1_2
TC Rep_3065_c_0 Rep_3065_c_0_1818 1957328 1958602 - 2.A.26.1.1
pfam Rep_3065_c_0 Rep_3065_c_0_1819 1958769 1959542 + BPD_transp_1
TC Rep_3065_c_0 Rep_3065_c_0_1820 1959539 1960138 + 3.A.1.6.1
NULL(UNKNOWN) Rep_3065_c_0 Rep_3065_c_0_1821 1960157 1960846 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3065_c_0 Rep_3065_c_0_1822 1960850 1961932 - Radical_SAM | HemN_C
TC Rep_3065_c_0 Rep_3065_c_0_1823 1962043 1962750 + 1.A.14.2.2
Gene ID: Rep_3065_c_0_1815
Type: CAZyme
Location: 1954386 - 1955366 (-)
Gene ID: Rep_3065_c_0_1816
Type: TF
Location: 1955413 - 1956093 (-)
Gene ID: Rep_3065_c_0_1817
Type: pfam
Location: 1956262 - 1957281 (+)
Gene ID: Rep_3065_c_0_1818
Type: TC
Location: 1957328 - 1958602 (-)
Gene ID: Rep_3065_c_0_1819
Type: pfam
Location: 1958769 - 1959542 (+)
Gene ID: Rep_3065_c_0_1820
Type: TC
Location: 1959539 - 1960138 (+)
Gene ID: Rep_3065_c_0_1821
Type:
Location: 1960157 - 1960846 (+)
Gene ID: Rep_3065_c_0_1822
Type: pfam
Location: 1960850 - 1961932 (-)
Gene ID: Rep_3065_c_0_1823
Type: TC
Location: 1962043 - 1962750 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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