Cluster: Rep_3065_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3065
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3065_c_0 | Rep_3065_c_0_1723 | 1851739 | 1853022 | + | 2.A.103.1.3 |
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_1724 | 1853050 | 1854177 | + | GT28 |
| pfam | Rep_3065_c_0 | Rep_3065_c_0_1725 | 1854237 | 1855733 | + | POTRA_1 |
| pfam | Rep_3065_c_0 | Rep_3065_c_0_1726 | 1855748 | 1857226 | + | Mur_ligase_C | Mur_ligase_M |
| TC | Rep_3065_c_0 | Rep_3065_c_0_1727 | 1857291 | 1859402 | - | 3.A.3.32.3 |
Gene ID: Rep_3065_c_0_1723
Type: TC
Location: 1851739 - 1853022 (+)
Type: TC
Location: 1851739 - 1853022 (+)
Gene ID: Rep_3065_c_0_1724
Type: CAZyme
Location: 1853050 - 1854177 (+)
Type: CAZyme
Location: 1853050 - 1854177 (+)
Gene ID: Rep_3065_c_0_1725
Type: pfam
Location: 1854237 - 1855733 (+)
Type: pfam
Location: 1854237 - 1855733 (+)
Gene ID: Rep_3065_c_0_1726
Type: pfam
Location: 1855748 - 1857226 (+)
Type: pfam
Location: 1855748 - 1857226 (+)
Gene ID: Rep_3065_c_0_1727
Type: TC
Location: 1857291 - 1859402 (-)
Type: TC
Location: 1857291 - 1859402 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.