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Cluster: Rep_3065_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3065_c_0 Rep_3065_c_0_1631 1744892 1745944 + 2.A.56.1.1
pfam Rep_3065_c_0 Rep_3065_c_0_1632 1746036 1746539 + DctQ
TC Rep_3065_c_0 Rep_3065_c_0_1633 1746539 1747819 + 2.A.56.1.9
pfam Rep_3065_c_0 Rep_3065_c_0_1634 1747918 1749003 + MPI_cupin_dom
CAZyme Rep_3065_c_0 Rep_3065_c_0_1635 1749071 1750216 - GH105
CAZyme Rep_3065_c_0 Rep_3065_c_0_1636 1750220 1751776 - GH28
TF Rep_3065_c_0 Rep_3065_c_0_1637 1751907 1752716 + HTH_AraC | HTH_AraC
TC Rep_3065_c_0 Rep_3065_c_0_1638 1753008 1753865 - 3.A.1.1.11
TC Rep_3065_c_0 Rep_3065_c_0_1639 1753877 1754803 - 3.A.1.1.11
Gene ID: Rep_3065_c_0_1631
Type: TC
Location: 1744892 - 1745944 (+)
Gene ID: Rep_3065_c_0_1632
Type: pfam
Location: 1746036 - 1746539 (+)
Gene ID: Rep_3065_c_0_1633
Type: TC
Location: 1746539 - 1747819 (+)
Gene ID: Rep_3065_c_0_1634
Type: pfam
Location: 1747918 - 1749003 (+)
Gene ID: Rep_3065_c_0_1635
Type: CAZyme
Location: 1749071 - 1750216 (-)
Gene ID: Rep_3065_c_0_1636
Type: CAZyme
Location: 1750220 - 1751776 (-)
Gene ID: Rep_3065_c_0_1637
Type: TF
Location: 1751907 - 1752716 (+)
Gene ID: Rep_3065_c_0_1638
Type: TC
Location: 1753008 - 1753865 (-)
Gene ID: Rep_3065_c_0_1639
Type: TC
Location: 1753877 - 1754803 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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