Cluster: Rep_3065_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3065
- CGC Family ID: CGCFAM_00075
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3065_c_0 | Rep_3065_c_0_1547 | 1650093 | 1652393 | + | 3.A.9.1.2 |
| NULL(UNKNOWN) | Rep_3065_c_0 | Rep_3065_c_0_1548 | 1652520 | 1652624 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3065_c_0 | Rep_3065_c_0_1549 | 1652756 | 1654000 | - | 2.A.37.3.3 |
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_1550 | 1654307 | 1655335 | - | GT2 |
| NULL(UNKNOWN) | Rep_3065_c_0 | Rep_3065_c_0_1551 | 1655559 | 1656131 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3065_c_0 | Rep_3065_c_0_1552 | 1656131 | 1657708 | + | 2.A.16.2.2 |
Gene ID: Rep_3065_c_0_1547
Type: TC
Location: 1650093 - 1652393 (+)
Type: TC
Location: 1650093 - 1652393 (+)
Gene ID: Rep_3065_c_0_1548
Type:
Location: 1652520 - 1652624 (-)
Type:
Location: 1652520 - 1652624 (-)
Gene ID: Rep_3065_c_0_1549
Type: TC
Location: 1652756 - 1654000 (-)
Type: TC
Location: 1652756 - 1654000 (-)
Gene ID: Rep_3065_c_0_1550
Type: CAZyme
Location: 1654307 - 1655335 (-)
Type: CAZyme
Location: 1654307 - 1655335 (-)
Gene ID: Rep_3065_c_0_1551
Type:
Location: 1655559 - 1656131 (+)
Type:
Location: 1655559 - 1656131 (+)
Gene ID: Rep_3065_c_0_1552
Type: TC
Location: 1656131 - 1657708 (+)
Type: TC
Location: 1656131 - 1657708 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3065_c_0_1551 | vegetarian > vegan | 1.17653 | 0.01287 |