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Cluster: Rep_3065_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3065_c_0 Rep_3065_c_0_1420 1515412 1516140 + 8.A.3.2.3
NULL(UNKNOWN) Rep_3065_c_0 Rep_3065_c_0_1421 1516157 1516660 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3065_c_0 Rep_3065_c_0_1422 1516846 1518204 + 9.B.18.1.3
CAZyme Rep_3065_c_0 Rep_3065_c_0_1423 1518904 1519737 + GT2
pfam Rep_3065_c_0 Rep_3065_c_0_1424 1519774 1521063 + Wzy_C
pfam Rep_3065_c_0 Rep_3065_c_0_1425 1521076 1522113 + Glycos_transf_1 | Glyco_transf_4 | Glyco_trans_1_4
CAZyme Rep_3065_c_0 Rep_3065_c_0_1426 1522110 1523159 + GT4
CAZyme Rep_3065_c_0 Rep_3065_c_0_1427 1523149 1524204 + GT2
Gene ID: Rep_3065_c_0_1420
Type: TC
Location: 1515412 - 1516140 (+)
Gene ID: Rep_3065_c_0_1421
Type:
Location: 1516157 - 1516660 (+)
Gene ID: Rep_3065_c_0_1422
Type: TC
Location: 1516846 - 1518204 (+)
Gene ID: Rep_3065_c_0_1423
Type: CAZyme
Location: 1518904 - 1519737 (+)
Gene ID: Rep_3065_c_0_1424
Type: pfam
Location: 1519774 - 1521063 (+)
Gene ID: Rep_3065_c_0_1425
Type: pfam
Location: 1521076 - 1522113 (+)
Gene ID: Rep_3065_c_0_1426
Type: CAZyme
Location: 1522110 - 1523159 (+)
Gene ID: Rep_3065_c_0_1427
Type: CAZyme
Location: 1523149 - 1524204 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3065_c_0_1423 vegan > omnivore 1.09676 0.00364

🧭 Explore Read Mapping of CGC

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