Cluster: Rep_3065_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3065
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_1087 | 1182002 | 1183441 | - | GH1 |
| TC | Rep_3065_c_0 | Rep_3065_c_0_1088 | 1183466 | 1184023 | - | 2.A.51.1.5 |
| TC | Rep_3065_c_0 | Rep_3065_c_0_1089 | 1184020 | 1184601 | - | 2.A.51.1.6 |
| sulfatase | Rep_3065_c_0 | Rep_3065_c_0_1090 | 1184682 | 1186145 | - | S1_64 |
| TC | Rep_3065_c_0 | Rep_3065_c_0_1091 | 1186172 | 1187644 | - | 4.A.1.2.6 |
Gene ID: Rep_3065_c_0_1087
Type: CAZyme
Location: 1182002 - 1183441 (-)
Type: CAZyme
Location: 1182002 - 1183441 (-)
Gene ID: Rep_3065_c_0_1088
Type: TC
Location: 1183466 - 1184023 (-)
Type: TC
Location: 1183466 - 1184023 (-)
Gene ID: Rep_3065_c_0_1089
Type: TC
Location: 1184020 - 1184601 (-)
Type: TC
Location: 1184020 - 1184601 (-)
Gene ID: Rep_3065_c_0_1090
Type: sulfatase
Location: 1184682 - 1186145 (-)
Type: sulfatase
Location: 1184682 - 1186145 (-)
Gene ID: Rep_3065_c_0_1091
Type: TC
Location: 1186172 - 1187644 (-)
Type: TC
Location: 1186172 - 1187644 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3065_c_0_1088 | vegan > omnivore | 5.38152 | 0.00364 |
| Rep_3065_c_0_1089 | vegan > omnivore | 4.87729 | 0.00364 |
| Rep_3065_c_0_1090 | vegan > omnivore | 5.25963 | 0.00364 |