Cluster: Rep_3065_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3065
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3065_c_0 | Rep_3065_c_0_76 | 85250 | 88489 | + | 3.A.1.122.2 |
| TF | Rep_3065_c_0 | Rep_3065_c_0_77 | 88890 | 89897 | + | LacI |
| TC | Rep_3065_c_0 | Rep_3065_c_0_78 | 89965 | 91302 | + | 3.A.1.1.45 |
| TC | Rep_3065_c_0 | Rep_3065_c_0_79 | 91350 | 92240 | + | 3.A.1.1.45 |
| TC | Rep_3065_c_0 | Rep_3065_c_0_80 | 92240 | 93082 | + | 3.A.1.1.45 |
| CAZyme | Rep_3065_c_0 | Rep_3065_c_0_81 | 93101 | 94576 | + | GH77 |
Gene ID: Rep_3065_c_0_76
Type: TC
Location: 85250 - 88489 (+)
Type: TC
Location: 85250 - 88489 (+)
Gene ID: Rep_3065_c_0_77
Type: TF
Location: 88890 - 89897 (+)
Type: TF
Location: 88890 - 89897 (+)
Gene ID: Rep_3065_c_0_78
Type: TC
Location: 89965 - 91302 (+)
Type: TC
Location: 89965 - 91302 (+)
Gene ID: Rep_3065_c_0_79
Type: TC
Location: 91350 - 92240 (+)
Type: TC
Location: 91350 - 92240 (+)
Gene ID: Rep_3065_c_0_80
Type: TC
Location: 92240 - 93082 (+)
Type: TC
Location: 92240 - 93082 (+)
Gene ID: Rep_3065_c_0_81
Type: CAZyme
Location: 93101 - 94576 (+)
Type: CAZyme
Location: 93101 - 94576 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium longum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.