Cluster: Rep_3060_CGC9
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3060
- CGC Family ID: CGCFAM_10650
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3060_c_13 | Rep_3060_c_13_10 | 9920 | 11071 | - | CE1 |
| pfam | Rep_3060_c_13 | Rep_3060_c_13_11 | 11358 | 12179 | - | Lactamase_B |
| CAZyme | Rep_3060_c_13 | Rep_3060_c_13_12 | 12855 | 13442 | - | CBM13 |
| pfam | Rep_3060_c_13 | Rep_3060_c_13_13 | 13637 | 14041 | + | MGS |
| TC | Rep_3060_c_13 | Rep_3060_c_13_14 | 14115 | 14774 | - | 2.A.115.1.2 |
Gene ID: Rep_3060_c_13_10
Type: CAZyme
Location: 9920 - 11071 (-)
Type: CAZyme
Location: 9920 - 11071 (-)
Gene ID: Rep_3060_c_13_11
Type: pfam
Location: 11358 - 12179 (-)
Type: pfam
Location: 11358 - 12179 (-)
Gene ID: Rep_3060_c_13_12
Type: CAZyme
Location: 12855 - 13442 (-)
Type: CAZyme
Location: 12855 - 13442 (-)
Gene ID: Rep_3060_c_13_13
Type: pfam
Location: 13637 - 14041 (+)
Type: pfam
Location: 13637 - 14041 (+)
Gene ID: Rep_3060_c_13_14
Type: TC
Location: 14115 - 14774 (-)
Type: TC
Location: 14115 - 14774 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.