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Cluster: Rep_3060_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3060_c_5 Rep_3060_c_5_46 41430 43265 + 3.D.1.5.1
STP Rep_3060_c_5 Rep_3060_c_5_47 43259 45019 + Fer4
TC Rep_3060_c_5 Rep_3060_c_5_48 45459 46370 + 3.A.1.5.2
TC Rep_3060_c_5 Rep_3060_c_5_49 46384 47481 + 3.A.1.5.2
TC Rep_3060_c_5 Rep_3060_c_5_50 47496 48512 + 3.A.1.5.2
TC Rep_3060_c_5 Rep_3060_c_5_51 48514 49557 + 3.A.1.5.20
TC Rep_3060_c_5 Rep_3060_c_5_52 49808 51766 + 3.A.1.5.1
pfam Rep_3060_c_5 Rep_3060_c_5_53 52062 52316 - IreB
CAZyme Rep_3060_c_5 Rep_3060_c_5_54 52487 53620 - CE9
sulfatase Rep_3060_c_5 Rep_3060_c_5_55 53636 54364 - S1_9
TC Rep_3060_c_5 Rep_3060_c_5_56 54569 56065 - 4.A.1.1.7
TC Rep_3060_c_5 Rep_3060_c_5_57 56464 57024 - 2.A.88.3.1
Gene ID: Rep_3060_c_5_46
Type: TC
Location: 41430 - 43265 (+)
Gene ID: Rep_3060_c_5_47
Type: STP
Location: 43259 - 45019 (+)
Gene ID: Rep_3060_c_5_48
Type: TC
Location: 45459 - 46370 (+)
Gene ID: Rep_3060_c_5_49
Type: TC
Location: 46384 - 47481 (+)
Gene ID: Rep_3060_c_5_50
Type: TC
Location: 47496 - 48512 (+)
Gene ID: Rep_3060_c_5_51
Type: TC
Location: 48514 - 49557 (+)
Gene ID: Rep_3060_c_5_52
Type: TC
Location: 49808 - 51766 (+)
Gene ID: Rep_3060_c_5_53
Type: pfam
Location: 52062 - 52316 (-)
Gene ID: Rep_3060_c_5_54
Type: CAZyme
Location: 52487 - 53620 (-)
Gene ID: Rep_3060_c_5_55
Type: sulfatase
Location: 53636 - 54364 (-)
Gene ID: Rep_3060_c_5_56
Type: TC
Location: 54569 - 56065 (-)
Gene ID: Rep_3060_c_5_57
Type: TC
Location: 56464 - 57024 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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