Cluster: Rep_3060_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3060
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3060_c_5 | Rep_3060_c_5_29 | 24465 | 25265 | + | 3.A.1.103.6 |
| TC | Rep_3060_c_5 | Rep_3060_c_5_30 | 25281 | 26033 | + | 3.A.1.103.1 |
| CAZyme | Rep_3060_c_5 | Rep_3060_c_5_31 | 26167 | 28053 | + | GT2 | GT2 |
| pfam | Rep_3060_c_5 | Rep_3060_c_5_32 | 28073 | 28321 | + | FakA-like_M |
| NULL(UNKNOWN) | Rep_3060_c_5 | Rep_3060_c_5_33 | 28314 | 28895 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3060_c_5 | Rep_3060_c_5_34 | 28892 | 30733 | + | GT2 |
Gene ID: Rep_3060_c_5_29
Type: TC
Location: 24465 - 25265 (+)
Type: TC
Location: 24465 - 25265 (+)
Gene ID: Rep_3060_c_5_30
Type: TC
Location: 25281 - 26033 (+)
Type: TC
Location: 25281 - 26033 (+)
Gene ID: Rep_3060_c_5_31
Type: CAZyme
Location: 26167 - 28053 (+)
Type: CAZyme
Location: 26167 - 28053 (+)
Gene ID: Rep_3060_c_5_32
Type: pfam
Location: 28073 - 28321 (+)
Type: pfam
Location: 28073 - 28321 (+)
Gene ID: Rep_3060_c_5_33
Type:
Location: 28314 - 28895 (+)
Type:
Location: 28314 - 28895 (+)
Gene ID: Rep_3060_c_5_34
Type: CAZyme
Location: 28892 - 30733 (+)
Type: CAZyme
Location: 28892 - 30733 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.