Cluster: Rep_3060_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3060
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3060_c_5 | Rep_3060_c_5_2 | 808 | 1650 | - | 3.A.1.1.11 |
| TC | Rep_3060_c_5 | Rep_3060_c_5_3 | 1663 | 2067 | - | 3.A.1.1.11 |
| TC | Rep_3060_c_5 | Rep_3060_c_5_4 | 2064 | 2588 | - | 3.A.1.1.11 |
| pfam | Rep_3060_c_5 | Rep_3060_c_5_5 | 2670 | 3128 | - | SBP_bac_1 | SBP_bac_8 |
| NULL(UNKNOWN) | Rep_3060_c_5 | Rep_3060_c_5_6 | 3077 | 3259 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3060_c_5 | Rep_3060_c_5_7 | 3256 | 4755 | - | GH177 |
| TF | Rep_3060_c_5 | Rep_3060_c_5_8 | 5187 | 6089 | - | HTH_1 |
| TC | Rep_3060_c_5 | Rep_3060_c_5_9 | 6297 | 6872 | + | 2.A.51.1.6 |
Gene ID: Rep_3060_c_5_2
Type: TC
Location: 808 - 1650 (-)
Type: TC
Location: 808 - 1650 (-)
Gene ID: Rep_3060_c_5_3
Type: TC
Location: 1663 - 2067 (-)
Type: TC
Location: 1663 - 2067 (-)
Gene ID: Rep_3060_c_5_4
Type: TC
Location: 2064 - 2588 (-)
Type: TC
Location: 2064 - 2588 (-)
Gene ID: Rep_3060_c_5_5
Type: pfam
Location: 2670 - 3128 (-)
Type: pfam
Location: 2670 - 3128 (-)
Gene ID: Rep_3060_c_5_6
Type:
Location: 3077 - 3259 (-)
Type:
Location: 3077 - 3259 (-)
Gene ID: Rep_3060_c_5_7
Type: CAZyme
Location: 3256 - 4755 (-)
Type: CAZyme
Location: 3256 - 4755 (-)
Gene ID: Rep_3060_c_5_8
Type: TF
Location: 5187 - 6089 (-)
Type: TF
Location: 5187 - 6089 (-)
Gene ID: Rep_3060_c_5_9
Type: TC
Location: 6297 - 6872 (+)
Type: TC
Location: 6297 - 6872 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.