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Cluster: Rep_3060_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3060_c_4 Rep_3060_c_4_20 21214 22575 - 2.A.66.1.22
STP Rep_3060_c_4 Rep_3060_c_4_21 22876 24084 + Aminotran_1_2
pfam Rep_3060_c_4 Rep_3060_c_4_22 24221 26278 + Transpeptidase | PBP_dimer | PASTA
TC Rep_3060_c_4 Rep_3060_c_4_23 26384 27100 + 3.A.1.125.2
TC Rep_3060_c_4 Rep_3060_c_4_24 27101 31234 + 3.A.1.137.2
TF Rep_3060_c_4 Rep_3060_c_4_25 31511 32014 + MarR
TC Rep_3060_c_4 Rep_3060_c_4_26 32061 33824 + 3.A.1.135.5
TC Rep_3060_c_4 Rep_3060_c_4_27 33824 35755 + 3.A.1.135.5
CAZyme Rep_3060_c_4 Rep_3060_c_4_28 35989 36822 + CBM13
Gene ID: Rep_3060_c_4_20
Type: TC
Location: 21214 - 22575 (-)
Gene ID: Rep_3060_c_4_21
Type: STP
Location: 22876 - 24084 (+)
Gene ID: Rep_3060_c_4_22
Type: pfam
Location: 24221 - 26278 (+)
Gene ID: Rep_3060_c_4_23
Type: TC
Location: 26384 - 27100 (+)
Gene ID: Rep_3060_c_4_24
Type: TC
Location: 27101 - 31234 (+)
Gene ID: Rep_3060_c_4_25
Type: TF
Location: 31511 - 32014 (+)
Gene ID: Rep_3060_c_4_26
Type: TC
Location: 32061 - 33824 (+)
Gene ID: Rep_3060_c_4_27
Type: TC
Location: 33824 - 35755 (+)
Gene ID: Rep_3060_c_4_28
Type: CAZyme
Location: 35989 - 36822 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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