Cluster: Rep_3060_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3060
- CGC Family ID: CGCFAM_04013
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3060_c_145 | Rep_3060_c_145_1 | 27 | 890 | - | 3.A.1.3.10 |
| NULL(UNKNOWN) | Rep_3060_c_145 | Rep_3060_c_145_2 | 1163 | 1357 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3060_c_145 | Rep_3060_c_145_3 | 1497 | 2372 | + | PPK2 |
| CAZyme | Rep_3060_c_145 | Rep_3060_c_145_4 | 2390 | 3499 | + | GT4 |
| CAZyme | Rep_3060_c_145 | Rep_3060_c_145_5 | 3496 | 3918 | + | GT2 |
Gene ID: Rep_3060_c_145_1
Type: TC
Location: 27 - 890 (-)
Type: TC
Location: 27 - 890 (-)
Gene ID: Rep_3060_c_145_2
Type:
Location: 1163 - 1357 (+)
Type:
Location: 1163 - 1357 (+)
Gene ID: Rep_3060_c_145_3
Type: pfam
Location: 1497 - 2372 (+)
Type: pfam
Location: 1497 - 2372 (+)
Gene ID: Rep_3060_c_145_4
Type: CAZyme
Location: 2390 - 3499 (+)
Type: CAZyme
Location: 2390 - 3499 (+)
Gene ID: Rep_3060_c_145_5
Type: CAZyme
Location: 3496 - 3918 (+)
Type: CAZyme
Location: 3496 - 3918 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.