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Cluster: Rep_3060_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3060_c_49 Rep_3060_c_49_2 1007 2515 + GH39
TC Rep_3060_c_49 Rep_3060_c_49_3 2549 4390 + 9.B.33.1.1
TF Rep_3060_c_49 Rep_3060_c_49_4 4365 5951 + HTH_AraC
TC Rep_3060_c_49 Rep_3060_c_49_5 6152 7858 + 3.A.1.1.29
TC Rep_3060_c_49 Rep_3060_c_49_6 8000 8950 + 3.A.1.1.29
TC Rep_3060_c_49 Rep_3060_c_49_7 8970 9893 + 3.A.1.1.29
pfam Rep_3060_c_49 Rep_3060_c_49_8 10140 11075 + IU_nuc_hydro
CAZyme Rep_3060_c_49 Rep_3060_c_49_9 11072 12781 + GH63
Gene ID: Rep_3060_c_49_2
Type: CAZyme
Location: 1007 - 2515 (+)
Gene ID: Rep_3060_c_49_3
Type: TC
Location: 2549 - 4390 (+)
Gene ID: Rep_3060_c_49_4
Type: TF
Location: 4365 - 5951 (+)
Gene ID: Rep_3060_c_49_5
Type: TC
Location: 6152 - 7858 (+)
Gene ID: Rep_3060_c_49_6
Type: TC
Location: 8000 - 8950 (+)
Gene ID: Rep_3060_c_49_7
Type: TC
Location: 8970 - 9893 (+)
Gene ID: Rep_3060_c_49_8
Type: pfam
Location: 10140 - 11075 (+)
Gene ID: Rep_3060_c_49_9
Type: CAZyme
Location: 11072 - 12781 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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