Cluster: Rep_3060_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3060
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3060_c_29 | Rep_3060_c_29_11 | 10470 | 11846 | + | 2.A.38.1.1 |
| TC | Rep_3060_c_29 | Rep_3060_c_29_12 | 11843 | 13312 | + | 2.A.38.1.1 |
| CAZyme | Rep_3060_c_29 | Rep_3060_c_29_13 | 13427 | 14206 | + | CE4 |
| NULL(UNKNOWN) | Rep_3060_c_29 | Rep_3060_c_29_14 | 14399 | 14944 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3060_c_29 | Rep_3060_c_29_15 | 14983 | 16290 | + | GH13_20 |
Gene ID: Rep_3060_c_29_11
Type: TC
Location: 10470 - 11846 (+)
Type: TC
Location: 10470 - 11846 (+)
Gene ID: Rep_3060_c_29_12
Type: TC
Location: 11843 - 13312 (+)
Type: TC
Location: 11843 - 13312 (+)
Gene ID: Rep_3060_c_29_13
Type: CAZyme
Location: 13427 - 14206 (+)
Type: CAZyme
Location: 13427 - 14206 (+)
Gene ID: Rep_3060_c_29_14
Type:
Location: 14399 - 14944 (+)
Type:
Location: 14399 - 14944 (+)
Gene ID: Rep_3060_c_29_15
Type: CAZyme
Location: 14983 - 16290 (+)
Type: CAZyme
Location: 14983 - 16290 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.