Cluster: Rep_3060_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_3060
- CGC Family ID: CGCFAM_00098
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3060_c_17 | Rep_3060_c_17_8 | 6698 | 8089 | + | 3.A.1.1.27 |
| TC | Rep_3060_c_17 | Rep_3060_c_17_9 | 8092 | 8955 | + | 3.A.1.1.27 |
| CAZyme | Rep_3060_c_17 | Rep_3060_c_17_10 | 9092 | 11056 | + | GH13_14 |
| CAZyme | Rep_3060_c_17 | Rep_3060_c_17_11 | 11072 | 13054 | + | GH133 |
| CAZyme | Rep_3060_c_17 | Rep_3060_c_17_12 | 13070 | 14695 | + | GH13_31 |
| CAZyme | Rep_3060_c_17 | Rep_3060_c_17_13 | 14769 | 16301 | + | GH77 |
| CAZyme | Rep_3060_c_17 | Rep_3060_c_17_14 | 16381 | 18672 | + | GT35 |
Gene ID: Rep_3060_c_17_8
Type: TC
Location: 6698 - 8089 (+)
Type: TC
Location: 6698 - 8089 (+)
Gene ID: Rep_3060_c_17_9
Type: TC
Location: 8092 - 8955 (+)
Type: TC
Location: 8092 - 8955 (+)
Gene ID: Rep_3060_c_17_10
Type: CAZyme
Location: 9092 - 11056 (+)
Type: CAZyme
Location: 9092 - 11056 (+)
Gene ID: Rep_3060_c_17_11
Type: CAZyme
Location: 11072 - 13054 (+)
Type: CAZyme
Location: 11072 - 13054 (+)
Gene ID: Rep_3060_c_17_12
Type: CAZyme
Location: 13070 - 14695 (+)
Type: CAZyme
Location: 13070 - 14695 (+)
Gene ID: Rep_3060_c_17_13
Type: CAZyme
Location: 14769 - 16301 (+)
Type: CAZyme
Location: 14769 - 16301 (+)
Gene ID: Rep_3060_c_17_14
Type: CAZyme
Location: 16381 - 18672 (+)
Type: CAZyme
Location: 16381 - 18672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.