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Cluster: Rep_3060_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3060_c_15 Rep_3060_c_15_8 5957 6391 - 1.A.22.1.8
NULL(UNKNOWN) Rep_3060_c_15 Rep_3060_c_15_9 6634 6990 + NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_3060_c_15 Rep_3060_c_15_10 7065 7592 - TetR_N
CAZyme Rep_3060_c_15 Rep_3060_c_15_11 7757 9523 + GH13_9
NULL(UNKNOWN) Rep_3060_c_15 Rep_3060_c_15_12 9604 9729 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3060_c_15 Rep_3060_c_15_13 9973 11307 + 3.D.6.1.2
TC Rep_3060_c_15 Rep_3060_c_15_14 11310 12290 + 3.D.6.1.2
pfam Rep_3060_c_15 Rep_3060_c_15_15 12290 12871 + FMN_bind
TC Rep_3060_c_15 Rep_3060_c_15_16 12874 13569 + 3.D.6.1.2
TC Rep_3060_c_15 Rep_3060_c_15_17 13566 14204 + 3.D.6.1.2
TC Rep_3060_c_15 Rep_3060_c_15_18 14223 15059 + 3.D.6.1.3
Gene ID: Rep_3060_c_15_8
Type: TC
Location: 5957 - 6391 (-)
Gene ID: Rep_3060_c_15_9
Type:
Location: 6634 - 6990 (+)
Gene ID: Rep_3060_c_15_10
Type: STP
Location: 7065 - 7592 (-)
Gene ID: Rep_3060_c_15_11
Type: CAZyme
Location: 7757 - 9523 (+)
Gene ID: Rep_3060_c_15_12
Type:
Location: 9604 - 9729 (-)
Gene ID: Rep_3060_c_15_13
Type: TC
Location: 9973 - 11307 (+)
Gene ID: Rep_3060_c_15_14
Type: TC
Location: 11310 - 12290 (+)
Gene ID: Rep_3060_c_15_15
Type: pfam
Location: 12290 - 12871 (+)
Gene ID: Rep_3060_c_15_16
Type: TC
Location: 12874 - 13569 (+)
Gene ID: Rep_3060_c_15_17
Type: TC
Location: 13566 - 14204 (+)
Gene ID: Rep_3060_c_15_18
Type: TC
Location: 14223 - 15059 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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