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Cluster: Rep_3060_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3060_c_0 Rep_3060_c_0_52 57049 59016 - GH67
pfam Rep_3060_c_0 Rep_3060_c_0_53 59032 60189 - Aminotran_5
CAZyme Rep_3060_c_0 Rep_3060_c_0_54 60186 63632 - GH2
STP Rep_3060_c_0 Rep_3060_c_0_55 63835 65577 - SBP_bac_1
TC Rep_3060_c_0 Rep_3060_c_0_56 65701 66606 - 3.A.1.1.29
TC Rep_3060_c_0 Rep_3060_c_0_57 66626 67573 - 3.A.1.1.10
CAZyme Rep_3060_c_0 Rep_3060_c_0_58 67654 69804 - GH3
CAZyme Rep_3060_c_0 Rep_3060_c_0_59 69881 71575 - CE17
CAZyme Rep_3060_c_0 Rep_3060_c_0_60 72202 73359 + GH8
Gene ID: Rep_3060_c_0_52
Type: CAZyme
Location: 57049 - 59016 (-)
Gene ID: Rep_3060_c_0_53
Type: pfam
Location: 59032 - 60189 (-)
Gene ID: Rep_3060_c_0_54
Type: CAZyme
Location: 60186 - 63632 (-)
Gene ID: Rep_3060_c_0_55
Type: STP
Location: 63835 - 65577 (-)
Gene ID: Rep_3060_c_0_56
Type: TC
Location: 65701 - 66606 (-)
Gene ID: Rep_3060_c_0_57
Type: TC
Location: 66626 - 67573 (-)
Gene ID: Rep_3060_c_0_58
Type: CAZyme
Location: 67654 - 69804 (-)
Gene ID: Rep_3060_c_0_59
Type: CAZyme
Location: 69881 - 71575 (-)
Gene ID: Rep_3060_c_0_60
Type: CAZyme
Location: 72202 - 73359 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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