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Cluster: Rep_304_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_304_c_35 Rep_304_c_35_4 1779 2774 + GH43_17
pfam Rep_304_c_35 Rep_304_c_35_5 2876 4612 - SusD_RagB | SusD-like_3
TC Rep_304_c_35 Rep_304_c_35_6 4634 7756 - 1.B.14.6.1
TF Rep_304_c_35 Rep_304_c_35_7 7937 10675 - HTH_AraC
CAZyme Rep_304_c_35 Rep_304_c_35_8 10864 12723 + GH32
TC Rep_304_c_35 Rep_304_c_35_9 12745 13929 + 2.A.1.7.17
STP Rep_304_c_35 Rep_304_c_35_10 13955 14833 + PfkB
pfam Rep_304_c_35 Rep_304_c_35_11 14956 15462 + PepSY_like | PepSY_like
TC Rep_304_c_35 Rep_304_c_35_12 16042 17859 + 2.A.47.4.8
CAZyme Rep_304_c_35 Rep_304_c_35_13 18379 19473 + CE2
Gene ID: Rep_304_c_35_4
Type: CAZyme
Location: 1779 - 2774 (+)
Gene ID: Rep_304_c_35_5
Type: pfam
Location: 2876 - 4612 (-)
Gene ID: Rep_304_c_35_6
Type: TC
Location: 4634 - 7756 (-)
Gene ID: Rep_304_c_35_7
Type: TF
Location: 7937 - 10675 (-)
Gene ID: Rep_304_c_35_8
Type: CAZyme
Location: 10864 - 12723 (+)
Gene ID: Rep_304_c_35_9
Type: TC
Location: 12745 - 13929 (+)
Gene ID: Rep_304_c_35_10
Type: STP
Location: 13955 - 14833 (+)
Gene ID: Rep_304_c_35_11
Type: pfam
Location: 14956 - 15462 (+)
Gene ID: Rep_304_c_35_12
Type: TC
Location: 16042 - 17859 (+)
Gene ID: Rep_304_c_35_13
Type: CAZyme
Location: 18379 - 19473 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Lepagella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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