Cluster: Rep_304_CGC38
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_304
- CGC Family ID: CGCFAM_01593
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_304_c_86 | Rep_304_c_86_12 | 9048 | 10127 | - | GT4 |
| CAZyme | Rep_304_c_86 | Rep_304_c_86_13 | 10163 | 11008 | - | GT2 |
| pfam | Rep_304_c_86 | Rep_304_c_86_14 | 11180 | 12691 | + | Phosphodiest | Metalloenzyme | iPGM_N |
| sulfatase | Rep_304_c_86 | Rep_304_c_86_15 | 12691 | 14265 | + | S1_14 |
| CAZyme | Rep_304_c_86 | Rep_304_c_86_16 | 14269 | 15456 | + | GH3 |
| CAZyme | Rep_304_c_86 | Rep_304_c_86_17 | 15465 | 16460 | - | GH43_34 |
| STP | Rep_304_c_86 | Rep_304_c_86_18 | 16511 | 17530 | - | FecR |
| STP | Rep_304_c_86 | Rep_304_c_86_19 | 17536 | 18126 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | Rep_304_c_86 | Rep_304_c_86_20 | 18420 | 21719 | + | 1.B.14.6.1 |
| TC | Rep_304_c_86 | Rep_304_c_86_21 | 21764 | 23476 | + | 8.A.46.1.1 |
| pfam | Rep_304_c_86 | Rep_304_c_86_22 | 23522 | 25078 | + | SusF_SusE | SusF_SusE | SusF_SusE |
| CAZyme | Rep_304_c_86 | Rep_304_c_86_23 | 25092 | 26522 | + | GH27 |
| pfam | Rep_304_c_86 | Rep_304_c_86_24 | 26572 | 27861 | + | SusF_SusE | SusF_SusE |
| CAZyme | Rep_304_c_86 | Rep_304_c_86_25 | 27993 | 30254 | + | GH3 |
| NULL(UNKNOWN) | Rep_304_c_86 | Rep_304_c_86_26 | 30251 | 32434 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_304_c_86 | Rep_304_c_86_27 | 32408 | 33088 | - | RadC | UPF0758_N |
| CAZyme | Rep_304_c_86 | Rep_304_c_86_28 | 33085 | 34131 | - | GT2 |
Gene ID: Rep_304_c_86_12
Type: CAZyme
Location: 9048 - 10127 (-)
Type: CAZyme
Location: 9048 - 10127 (-)
Gene ID: Rep_304_c_86_13
Type: CAZyme
Location: 10163 - 11008 (-)
Type: CAZyme
Location: 10163 - 11008 (-)
Gene ID: Rep_304_c_86_14
Type: pfam
Location: 11180 - 12691 (+)
Type: pfam
Location: 11180 - 12691 (+)
Gene ID: Rep_304_c_86_15
Type: sulfatase
Location: 12691 - 14265 (+)
Type: sulfatase
Location: 12691 - 14265 (+)
Gene ID: Rep_304_c_86_16
Type: CAZyme
Location: 14269 - 15456 (+)
Type: CAZyme
Location: 14269 - 15456 (+)
Gene ID: Rep_304_c_86_17
Type: CAZyme
Location: 15465 - 16460 (-)
Type: CAZyme
Location: 15465 - 16460 (-)
Gene ID: Rep_304_c_86_18
Type: STP
Location: 16511 - 17530 (-)
Type: STP
Location: 16511 - 17530 (-)
Gene ID: Rep_304_c_86_19
Type: STP
Location: 17536 - 18126 (-)
Type: STP
Location: 17536 - 18126 (-)
Gene ID: Rep_304_c_86_20
Type: TC
Location: 18420 - 21719 (+)
Type: TC
Location: 18420 - 21719 (+)
Gene ID: Rep_304_c_86_21
Type: TC
Location: 21764 - 23476 (+)
Type: TC
Location: 21764 - 23476 (+)
Gene ID: Rep_304_c_86_22
Type: pfam
Location: 23522 - 25078 (+)
Type: pfam
Location: 23522 - 25078 (+)
Gene ID: Rep_304_c_86_23
Type: CAZyme
Location: 25092 - 26522 (+)
Type: CAZyme
Location: 25092 - 26522 (+)
Gene ID: Rep_304_c_86_24
Type: pfam
Location: 26572 - 27861 (+)
Type: pfam
Location: 26572 - 27861 (+)
Gene ID: Rep_304_c_86_25
Type: CAZyme
Location: 27993 - 30254 (+)
Type: CAZyme
Location: 27993 - 30254 (+)
Gene ID: Rep_304_c_86_26
Type:
Location: 30251 - 32434 (+)
Type:
Location: 30251 - 32434 (+)
Gene ID: Rep_304_c_86_27
Type: pfam
Location: 32408 - 33088 (-)
Type: pfam
Location: 32408 - 33088 (-)
Gene ID: Rep_304_c_86_28
Type: CAZyme
Location: 33085 - 34131 (-)
Type: CAZyme
Location: 33085 - 34131 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.