Cluster: Rep_304_CGC23
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_304
- CGC Family ID: CGCFAM_01223
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_304_c_67 | Rep_304_c_67_10 | 13384 | 16551 | - | 1.B.14.6.1 |
| CAZyme | Rep_304_c_67 | Rep_304_c_67_11 | 16570 | 18036 | - | GH76 |
| pfam | Rep_304_c_67 | Rep_304_c_67_12 | 18053 | 19873 | - | CarboxypepD_reg | CarboxypepD_reg | CarbopepD_reg_2 | CarbopepD_reg_2 |
| CAZyme | Rep_304_c_67 | Rep_304_c_67_13 | 20540 | 22903 | + | GH92 |
| pfam | Rep_304_c_67 | Rep_304_c_67_14 | 23100 | 23366 | - | Bac_rhamnosid_C |
| CAZyme | Rep_304_c_67 | Rep_304_c_67_15 | 23467 | 24171 | - | CBM67 |
| sulfatase | Rep_304_c_67 | Rep_304_c_67_16 | 24184 | 26637 | - | S1_4 |
| TF | Rep_304_c_67 | Rep_304_c_67_17 | 26917 | 30963 | + | HTH_AraC |
| CAZyme | Rep_304_c_67 | Rep_304_c_67_18 | 31102 | 32565 | + | GH125 |
| pfam | Rep_304_c_67 | Rep_304_c_67_19 | 32592 | 33545 | + | Exo_endo_phos |
| CAZyme | Rep_304_c_67 | Rep_304_c_67_20 | 33561 | 34523 | + | GH43_34 |
| pfam | Rep_304_c_67 | Rep_304_c_67_21 | 34704 | 36044 | + | AAA_14 | DUF4143 |
| CAZyme | Rep_304_c_67 | Rep_304_c_67_22 | 36158 | 38710 | + | GH115 |
Gene ID: Rep_304_c_67_10
Type: TC
Location: 13384 - 16551 (-)
Type: TC
Location: 13384 - 16551 (-)
Gene ID: Rep_304_c_67_11
Type: CAZyme
Location: 16570 - 18036 (-)
Type: CAZyme
Location: 16570 - 18036 (-)
Gene ID: Rep_304_c_67_12
Type: pfam
Location: 18053 - 19873 (-)
Type: pfam
Location: 18053 - 19873 (-)
Gene ID: Rep_304_c_67_13
Type: CAZyme
Location: 20540 - 22903 (+)
Type: CAZyme
Location: 20540 - 22903 (+)
Gene ID: Rep_304_c_67_14
Type: pfam
Location: 23100 - 23366 (-)
Type: pfam
Location: 23100 - 23366 (-)
Gene ID: Rep_304_c_67_15
Type: CAZyme
Location: 23467 - 24171 (-)
Type: CAZyme
Location: 23467 - 24171 (-)
Gene ID: Rep_304_c_67_16
Type: sulfatase
Location: 24184 - 26637 (-)
Type: sulfatase
Location: 24184 - 26637 (-)
Gene ID: Rep_304_c_67_17
Type: TF
Location: 26917 - 30963 (+)
Type: TF
Location: 26917 - 30963 (+)
Gene ID: Rep_304_c_67_18
Type: CAZyme
Location: 31102 - 32565 (+)
Type: CAZyme
Location: 31102 - 32565 (+)
Gene ID: Rep_304_c_67_19
Type: pfam
Location: 32592 - 33545 (+)
Type: pfam
Location: 32592 - 33545 (+)
Gene ID: Rep_304_c_67_20
Type: CAZyme
Location: 33561 - 34523 (+)
Type: CAZyme
Location: 33561 - 34523 (+)
Gene ID: Rep_304_c_67_21
Type: pfam
Location: 34704 - 36044 (+)
Type: pfam
Location: 34704 - 36044 (+)
Gene ID: Rep_304_c_67_22
Type: CAZyme
Location: 36158 - 38710 (+)
Type: CAZyme
Location: 36158 - 38710 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.