Cluster: Rep_304_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_304
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_304_c_47 | Rep_304_c_47_37 | 38955 | 41405 | - | GH95 |
| CAZyme | Rep_304_c_47 | Rep_304_c_47_38 | 41478 | 43046 | - | GH43_35 |
| STP | Rep_304_c_47 | Rep_304_c_47_39 | 43145 | 43657 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | Rep_304_c_47 | Rep_304_c_47_40 | 44007 | 45629 | + | CE20 | CE20 |
| CAZyme | Rep_304_c_47 | Rep_304_c_47_41 | 45604 | 47193 | - | CBM32 | GH43_24 |
| CAZyme | Rep_304_c_47 | Rep_304_c_47_42 | 47245 | 49554 | - | GH105 | GH154 |
| TF | Rep_304_c_47 | Rep_304_c_47_43 | 49626 | 50033 | - | HTH_AraC | HTH_AraC |
| STP | Rep_304_c_47 | Rep_304_c_47_44 | 50056 | 53739 | - | HATPase_c | HisKA | Response_reg | Y_Y_Y |
| TC | Rep_304_c_47 | Rep_304_c_47_45 | 54489 | 57779 | + | 1.B.14.6.1 |
| pfam | Rep_304_c_47 | Rep_304_c_47_46 | 57796 | 59901 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_304_c_47 | Rep_304_c_47_47 | 60033 | 60857 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_304_c_47 | Rep_304_c_47_48 | 60928 | 62529 | + | GH16_3 |
Gene ID: Rep_304_c_47_37
Type: CAZyme
Location: 38955 - 41405 (-)
Type: CAZyme
Location: 38955 - 41405 (-)
Gene ID: Rep_304_c_47_38
Type: CAZyme
Location: 41478 - 43046 (-)
Type: CAZyme
Location: 41478 - 43046 (-)
Gene ID: Rep_304_c_47_39
Type: STP
Location: 43145 - 43657 (-)
Type: STP
Location: 43145 - 43657 (-)
Gene ID: Rep_304_c_47_40
Type: CAZyme
Location: 44007 - 45629 (+)
Type: CAZyme
Location: 44007 - 45629 (+)
Gene ID: Rep_304_c_47_41
Type: CAZyme
Location: 45604 - 47193 (-)
Type: CAZyme
Location: 45604 - 47193 (-)
Gene ID: Rep_304_c_47_42
Type: CAZyme
Location: 47245 - 49554 (-)
Type: CAZyme
Location: 47245 - 49554 (-)
Gene ID: Rep_304_c_47_43
Type: TF
Location: 49626 - 50033 (-)
Type: TF
Location: 49626 - 50033 (-)
Gene ID: Rep_304_c_47_44
Type: STP
Location: 50056 - 53739 (-)
Type: STP
Location: 50056 - 53739 (-)
Gene ID: Rep_304_c_47_45
Type: TC
Location: 54489 - 57779 (+)
Type: TC
Location: 54489 - 57779 (+)
Gene ID: Rep_304_c_47_46
Type: pfam
Location: 57796 - 59901 (+)
Type: pfam
Location: 57796 - 59901 (+)
Gene ID: Rep_304_c_47_47
Type:
Location: 60033 - 60857 (+)
Type:
Location: 60033 - 60857 (+)
Gene ID: Rep_304_c_47_48
Type: CAZyme
Location: 60928 - 62529 (+)
Type: CAZyme
Location: 60928 - 62529 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.