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Cluster: Rep_304_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_304_c_0 Rep_304_c_0_32 31995 32654 + 2.A.115.2.14
TC Rep_304_c_0 Rep_304_c_0_33 32629 34032 - 9.B.126.2.1
CAZyme Rep_304_c_0 Rep_304_c_0_34 34602 36986 + GH2
pfam Rep_304_c_0 Rep_304_c_0_35 36989 38641 - AMP-binding | AMP-binding_C
CAZyme Rep_304_c_0 Rep_304_c_0_36 39012 40475 - GH57
CAZyme Rep_304_c_0 Rep_304_c_0_37 40495 41754 - GT4
CAZyme Rep_304_c_0 Rep_304_c_0_38 41773 43725 - GH133
TC Rep_304_c_0 Rep_304_c_0_39 43985 45448 - 3.D.9.1.1
TC Rep_304_c_0 Rep_304_c_0_40 45476 46993 - 3.D.1.2.1
TC Rep_304_c_0 Rep_304_c_0_41 47021 49006 - 3.D.1.2.1
TC Rep_304_c_0 Rep_304_c_0_42 49009 49320 - 3.D.1.2.1
pfam Rep_304_c_0 Rep_304_c_0_43 49326 49853 - Oxidored_q3
STP Rep_304_c_0 Rep_304_c_0_44 49894 50442 - Fer4 | Fer4
TC Rep_304_c_0 Rep_304_c_0_45 50487 51362 - 3.A.2.1.1
TC Rep_304_c_0 Rep_304_c_0_46 51382 52965 - 3.A.2.1.3
pfam Rep_304_c_0 Rep_304_c_0_47 52967 53515 - OSCP
pfam Rep_304_c_0 Rep_304_c_0_48 53520 54014 - ATP-synt_B | Mt_ATP-synt_B
TC Rep_304_c_0 Rep_304_c_0_49 54094 54363 - 3.A.2.1.6
TC Rep_304_c_0 Rep_304_c_0_50 54402 55778 - 3.A.2.1.6
pfam Rep_304_c_0 Rep_304_c_0_51 55815 56051 - ATP-synt_DE_N
TC Rep_304_c_0 Rep_304_c_0_52 56059 57561 - 3.A.2.1.2
TC Rep_304_c_0 Rep_304_c_0_53 57590 58669 - 3.D.1.5.1
TC Rep_304_c_0 Rep_304_c_0_54 58709 60340 - 3.D.1.5.1
TC Rep_304_c_0 Rep_304_c_0_55 60347 60961 - 3.D.1.6.1
TC Rep_304_c_0 Rep_304_c_0_56 60952 61323 - 3.D.1.8.1
Gene ID: Rep_304_c_0_32
Type: TC
Location: 31995 - 32654 (+)
Gene ID: Rep_304_c_0_33
Type: TC
Location: 32629 - 34032 (-)
Gene ID: Rep_304_c_0_34
Type: CAZyme
Location: 34602 - 36986 (+)
Gene ID: Rep_304_c_0_35
Type: pfam
Location: 36989 - 38641 (-)
Gene ID: Rep_304_c_0_36
Type: CAZyme
Location: 39012 - 40475 (-)
Gene ID: Rep_304_c_0_37
Type: CAZyme
Location: 40495 - 41754 (-)
Gene ID: Rep_304_c_0_38
Type: CAZyme
Location: 41773 - 43725 (-)
Gene ID: Rep_304_c_0_39
Type: TC
Location: 43985 - 45448 (-)
Gene ID: Rep_304_c_0_40
Type: TC
Location: 45476 - 46993 (-)
Gene ID: Rep_304_c_0_41
Type: TC
Location: 47021 - 49006 (-)
Gene ID: Rep_304_c_0_42
Type: TC
Location: 49009 - 49320 (-)
Gene ID: Rep_304_c_0_43
Type: pfam
Location: 49326 - 49853 (-)
Gene ID: Rep_304_c_0_44
Type: STP
Location: 49894 - 50442 (-)
Gene ID: Rep_304_c_0_45
Type: TC
Location: 50487 - 51362 (-)
Gene ID: Rep_304_c_0_46
Type: TC
Location: 51382 - 52965 (-)
Gene ID: Rep_304_c_0_47
Type: pfam
Location: 52967 - 53515 (-)
Gene ID: Rep_304_c_0_48
Type: pfam
Location: 53520 - 54014 (-)
Gene ID: Rep_304_c_0_49
Type: TC
Location: 54094 - 54363 (-)
Gene ID: Rep_304_c_0_50
Type: TC
Location: 54402 - 55778 (-)
Gene ID: Rep_304_c_0_51
Type: pfam
Location: 55815 - 56051 (-)
Gene ID: Rep_304_c_0_52
Type: TC
Location: 56059 - 57561 (-)
Gene ID: Rep_304_c_0_53
Type: TC
Location: 57590 - 58669 (-)
Gene ID: Rep_304_c_0_54
Type: TC
Location: 58709 - 60340 (-)
Gene ID: Rep_304_c_0_55
Type: TC
Location: 60347 - 60961 (-)
Gene ID: Rep_304_c_0_56
Type: TC
Location: 60952 - 61323 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Lepagella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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