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Cluster: Rep_303_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_303_c_4 Rep_303_c_4_54 63514 66822 + 1.B.14.6.1
pfam Rep_303_c_4 Rep_303_c_4_55 66842 68569 + SusD_RagB | SusD-like_3
pfam Rep_303_c_4 Rep_303_c_4_56 68645 70159 + SusF_SusE | SusF_SusE
CAZyme Rep_303_c_4 Rep_303_c_4_57 70261 71670 + GH27
pfam Rep_303_c_4 Rep_303_c_4_58 71683 72618 + SusF_SusE
CAZyme Rep_303_c_4 Rep_303_c_4_59 72625 74604 + CE20 | CE20
CAZyme Rep_303_c_4 Rep_303_c_4_60 74627 76681 + GH97
CAZyme Rep_303_c_4 Rep_303_c_4_61 76956 78779 + GH127
NULL(UNKNOWN) Rep_303_c_4 Rep_303_c_4_62 79008 79223 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_303_c_4 Rep_303_c_4_63 79440 81341 - 1.A.33.1.2
Gene ID: Rep_303_c_4_54
Type: TC
Location: 63514 - 66822 (+)
Gene ID: Rep_303_c_4_55
Type: pfam
Location: 66842 - 68569 (+)
Gene ID: Rep_303_c_4_56
Type: pfam
Location: 68645 - 70159 (+)
Gene ID: Rep_303_c_4_57
Type: CAZyme
Location: 70261 - 71670 (+)
Gene ID: Rep_303_c_4_58
Type: pfam
Location: 71683 - 72618 (+)
Gene ID: Rep_303_c_4_59
Type: CAZyme
Location: 72625 - 74604 (+)
Gene ID: Rep_303_c_4_60
Type: CAZyme
Location: 74627 - 76681 (+)
Gene ID: Rep_303_c_4_61
Type: CAZyme
Location: 76956 - 78779 (+)
Gene ID: Rep_303_c_4_62
Type:
Location: 79008 - 79223 (-)
Gene ID: Rep_303_c_4_63
Type: TC
Location: 79440 - 81341 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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