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Cluster: Rep_303_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_303_c_1 Rep_303_c_1_26 30069 31541 - 2.A.1.1.3
pfam Rep_303_c_1 Rep_303_c_1_27 31676 32995 - AP_endonuc_2
pfam Rep_303_c_1 Rep_303_c_1_28 33016 34497 - FGGY_N | FGGY_C
CAZyme Rep_303_c_1 Rep_303_c_1_29 34713 36443 - GH5_4
NULL(UNKNOWN) Rep_303_c_1 Rep_303_c_1_30 36469 38595 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_303_c_1 Rep_303_c_1_31 38609 40378 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_303_c_1 Rep_303_c_1_32 40455 42122 - 8.A.46.1.2
NULL(UNKNOWN) Rep_303_c_1 Rep_303_c_1_33 42257 42361 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_303_c_1 Rep_303_c_1_34 42385 45552 - 1.B.14.6.1
TF Rep_303_c_1 Rep_303_c_1_35 45884 49888 + HTH_AraC | HTH_AraC
CAZyme Rep_303_c_1 Rep_303_c_1_36 50137 53019 + GH31_4
CAZyme Rep_303_c_1 Rep_303_c_1_37 53098 55575 + GH2
Gene ID: Rep_303_c_1_26
Type: TC
Location: 30069 - 31541 (-)
Gene ID: Rep_303_c_1_27
Type: pfam
Location: 31676 - 32995 (-)
Gene ID: Rep_303_c_1_28
Type: pfam
Location: 33016 - 34497 (-)
Gene ID: Rep_303_c_1_29
Type: CAZyme
Location: 34713 - 36443 (-)
Gene ID: Rep_303_c_1_30
Type:
Location: 36469 - 38595 (-)
Gene ID: Rep_303_c_1_31
Type:
Location: 38609 - 40378 (-)
Gene ID: Rep_303_c_1_32
Type: TC
Location: 40455 - 42122 (-)
Gene ID: Rep_303_c_1_33
Type:
Location: 42257 - 42361 (-)
Gene ID: Rep_303_c_1_34
Type: TC
Location: 42385 - 45552 (-)
Gene ID: Rep_303_c_1_35
Type: TF
Location: 45884 - 49888 (+)
Gene ID: Rep_303_c_1_36
Type: CAZyme
Location: 50137 - 53019 (+)
Gene ID: Rep_303_c_1_37
Type: CAZyme
Location: 53098 - 55575 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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