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Cluster: Rep_303_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_303_c_24 Rep_303_c_24_2 897 1889 + GH43_34
STP Rep_303_c_24 Rep_303_c_24_3 1894 2979 + FecR
TC Rep_303_c_24 Rep_303_c_24_4 3280 6642 + 1.B.14.6.1
TC Rep_303_c_24 Rep_303_c_24_5 6691 8553 + 8.A.46.1.5
CAZyme Rep_303_c_24 Rep_303_c_24_6 8655 10070 + GH28
CAZyme Rep_303_c_24 Rep_303_c_24_7 10087 11970 + GH127
CAZyme Rep_303_c_24 Rep_303_c_24_8 12063 14309 + GH3
CAZyme Rep_303_c_24 Rep_303_c_24_9 14343 15731 + GH37
CAZyme Rep_303_c_24 Rep_303_c_24_10 15929 18499 + GH78
pfam Rep_303_c_24 Rep_303_c_24_11 18529 19953 + FGGY_N | FGGY_C
pfam Rep_303_c_24 Rep_303_c_24_12 19956 21209 + RhaA
TC Rep_303_c_24 Rep_303_c_24_13 21209 22201 + 2.A.7.6.1
Gene ID: Rep_303_c_24_2
Type: CAZyme
Location: 897 - 1889 (+)
Gene ID: Rep_303_c_24_3
Type: STP
Location: 1894 - 2979 (+)
Gene ID: Rep_303_c_24_4
Type: TC
Location: 3280 - 6642 (+)
Gene ID: Rep_303_c_24_5
Type: TC
Location: 6691 - 8553 (+)
Gene ID: Rep_303_c_24_6
Type: CAZyme
Location: 8655 - 10070 (+)
Gene ID: Rep_303_c_24_7
Type: CAZyme
Location: 10087 - 11970 (+)
Gene ID: Rep_303_c_24_8
Type: CAZyme
Location: 12063 - 14309 (+)
Gene ID: Rep_303_c_24_9
Type: CAZyme
Location: 14343 - 15731 (+)
Gene ID: Rep_303_c_24_10
Type: CAZyme
Location: 15929 - 18499 (+)
Gene ID: Rep_303_c_24_11
Type: pfam
Location: 18529 - 19953 (+)
Gene ID: Rep_303_c_24_12
Type: pfam
Location: 19956 - 21209 (+)
Gene ID: Rep_303_c_24_13
Type: TC
Location: 21209 - 22201 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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