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Cluster: Rep_303_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_303_c_22 Rep_303_c_22_14 14195 17485 + 1.B.14.6.1
TC Rep_303_c_22 Rep_303_c_22_15 17515 19236 + 8.A.46.1.1
pfam Rep_303_c_22 Rep_303_c_22_16 19255 21186 + SusF_SusE | SusF_SusE
NULL(UNKNOWN) Rep_303_c_22 Rep_303_c_22_17 21199 21339 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_303_c_22 Rep_303_c_22_18 21554 22966 + GH27
pfam Rep_303_c_22 Rep_303_c_22_19 23017 24294 + SusF_SusE
CAZyme Rep_303_c_22 Rep_303_c_22_20 24388 28395 + GH127 | GH3
CAZyme Rep_303_c_22 Rep_303_c_22_21 28407 30737 + GH3
Gene ID: Rep_303_c_22_14
Type: TC
Location: 14195 - 17485 (+)
Gene ID: Rep_303_c_22_15
Type: TC
Location: 17515 - 19236 (+)
Gene ID: Rep_303_c_22_16
Type: pfam
Location: 19255 - 21186 (+)
Gene ID: Rep_303_c_22_17
Type:
Location: 21199 - 21339 (-)
Gene ID: Rep_303_c_22_18
Type: CAZyme
Location: 21554 - 22966 (+)
Gene ID: Rep_303_c_22_19
Type: pfam
Location: 23017 - 24294 (+)
Gene ID: Rep_303_c_22_20
Type: CAZyme
Location: 24388 - 28395 (+)
Gene ID: Rep_303_c_22_21
Type: CAZyme
Location: 28407 - 30737 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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