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Cluster: Rep_303_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_303_c_14 Rep_303_c_14_34 49519 50706 + GH3
CAZyme Rep_303_c_14 Rep_303_c_14_35 50755 51711 - GH43_34
STP Rep_303_c_14 Rep_303_c_14_36 51802 52818 - FecR
STP Rep_303_c_14 Rep_303_c_14_37 52824 53414 - Sigma70_r2 | Sigma70_r4_2
TC Rep_303_c_14 Rep_303_c_14_38 53656 56955 + 1.B.14.6.1
TC Rep_303_c_14 Rep_303_c_14_39 56973 58712 + 8.A.46.1.1
pfam Rep_303_c_14 Rep_303_c_14_40 58770 60326 + SusF_SusE | SusF_SusE
CAZyme Rep_303_c_14 Rep_303_c_14_41 60349 61779 + GH27
Gene ID: Rep_303_c_14_34
Type: CAZyme
Location: 49519 - 50706 (+)
Gene ID: Rep_303_c_14_35
Type: CAZyme
Location: 50755 - 51711 (-)
Gene ID: Rep_303_c_14_36
Type: STP
Location: 51802 - 52818 (-)
Gene ID: Rep_303_c_14_37
Type: STP
Location: 52824 - 53414 (-)
Gene ID: Rep_303_c_14_38
Type: TC
Location: 53656 - 56955 (+)
Gene ID: Rep_303_c_14_39
Type: TC
Location: 56973 - 58712 (+)
Gene ID: Rep_303_c_14_40
Type: pfam
Location: 58770 - 60326 (+)
Gene ID: Rep_303_c_14_41
Type: CAZyme
Location: 60349 - 61779 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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