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Cluster: Rep_303_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_303_c_14 Rep_303_c_14_9 13915 17046 - 1.B.14.6.1
CAZyme Rep_303_c_14 Rep_303_c_14_10 17296 18960 - CBM91 | GH43_10
TF Rep_303_c_14 Rep_303_c_14_11 19348 23313 + HTH_AraC | HTH_AraC
pfam Rep_303_c_14 Rep_303_c_14_12 23291 23617 + GH43_C2
CAZyme Rep_303_c_14 Rep_303_c_14_13 23648 25993 + GH31_4
CAZyme Rep_303_c_14 Rep_303_c_14_14 26030 28477 + GH2
pfam Rep_303_c_14 Rep_303_c_14_15 28794 29099 + GH97_C
CAZyme Rep_303_c_14 Rep_303_c_14_16 29459 31150 + GH97
CAZyme Rep_303_c_14 Rep_303_c_14_17 31374 33833 + GH95
Gene ID: Rep_303_c_14_9
Type: TC
Location: 13915 - 17046 (-)
Gene ID: Rep_303_c_14_10
Type: CAZyme
Location: 17296 - 18960 (-)
Gene ID: Rep_303_c_14_11
Type: TF
Location: 19348 - 23313 (+)
Gene ID: Rep_303_c_14_12
Type: pfam
Location: 23291 - 23617 (+)
Gene ID: Rep_303_c_14_13
Type: CAZyme
Location: 23648 - 25993 (+)
Gene ID: Rep_303_c_14_14
Type: CAZyme
Location: 26030 - 28477 (+)
Gene ID: Rep_303_c_14_15
Type: pfam
Location: 28794 - 29099 (+)
Gene ID: Rep_303_c_14_16
Type: CAZyme
Location: 29459 - 31150 (+)
Gene ID: Rep_303_c_14_17
Type: CAZyme
Location: 31374 - 33833 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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